Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006137.1

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1318

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 593 bp

atggtgacgatgacgaagaagacgtcgccaccgccaatcacggcgcgccacgtgattaggtccagctggaagcttctgatcgtcttctccgtcttgctctgcgttttggctctgtacaggtttcagtctcagcagccagacctctactctccttcttcttcttcttcttcttcattatctcgcgcgagatctcgaattgctcgccacagcgtcagcttcgccggccccgccaagatcgccttcctatttctcgcgcgacgtgacctcccgctcgattttctttgggagagcttcttcgagaatgccggtggcgctttgaatttttcgatttatattcactcggcgcctggttttgtgttcgatgagtccacgacgaggtctcgcttctttcacggccgtcagttgccgaatagcatacaggtgggatggggagaatcgagcatgattgaagcggagaggttgttgtttgcaacagctcttgaggatccggcaaatcaaagatttgttctcctctctgacagttgcgttcctttgtacaacttcagcttcatatacaattacctgatggcttctcctaggagtattgtggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

9.51

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	5 cut(s)	46, 183, 185, 254, 256
AciI	CCGC	4 cut(s)	32, 228, 269, 452
AclWI	GGATC	2 cut(s)	479, 492
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	526
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	2 cut(s)	23, 344
AfaI	GTAC	2 cut(s)	116, 536
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	319, 449
AjiI	CACGTC	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	6 cut(s)	66, 73, 216, 291, 476, 546
AluI	AGCT	6 cut(s)	66, 73, 216, 291, 476, 546
Alw26I	GTCTC	2 cut(s)	132, 384
AlwI	GGATC	2 cut(s)	479, 492
AoxI	GGCC	2 cut(s)	223, 394
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AscI	GGCGCGCC	1 cut(s)	44
AspA2I	CCTAGG	1 cut(s)	575
AspLEI	GCGC	6 cut(s)	46, 48, 185, 256, 314, 346
AspS9I	GGNCC	2 cut(s)	60, 224
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	60
AvrII	CCTAGG	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	343
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	2 cut(s)	26, 76
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	420, 559
BceAI	ACGGC	3 cut(s)	57, 381, 409
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	132, 384
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	2 cut(s)	315, 347
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	134
BlnI	CCTAGG	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	60, 224
BmiI	GGNNCC	3 cut(s)	226, 345, 486
BmrFI	CCNGG	1 cut(s)	348
BpiI	GAAGAC	2 cut(s)	26, 76
BpuEI	CTTGAG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	23, 344
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse118I	RCCGGY	2 cut(s)	221, 305
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	143
BsePI	GCGCGC	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	500
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	5 cut(s)	46, 183, 185, 254, 256
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	225, 396
BshNI	GGYRCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	222, 306, 488
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	132, 384
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	225, 396
Bso31I	GGTCTC	1 cut(s)	384
Bsp1407I	TGTACA	2 cut(s)	114, 534
Bsp143I	GATC	4 cut(s)	78, 188, 234, 484
BspACI	CCGC	4 cut(s)	32, 228, 269, 452
BspANI	GGCC	2 cut(s)	225, 396
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	5 cut(s)	46, 183, 185, 254, 256
BspLI	GGNNCC	3 cut(s)	226, 345, 486
BspPI	GGATC	2 cut(s)	479, 492
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	221, 305
BsrGI	TGTACA	2 cut(s)	114, 534
BssAI	RCCGGY	2 cut(s)	221, 305
BssECI	CCNNGG	1 cut(s)	575
BssHII	GCGCGC	1 cut(s)	44
BssMI	GATC	4 cut(s)	78, 188, 234, 484
BssNI	GRCGYC	2 cut(s)	23, 344
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	521
BstACI	GRCGYC	2 cut(s)	23, 344
BstAUI	TGTACA	2 cut(s)	114, 534
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	46, 202, 223
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	5 cut(s)	46, 183, 185, 254, 256
BstH2I	RGCGCY	2 cut(s)	315, 347
BstHHI	GCGC	6 cut(s)	46, 48, 185, 256, 314, 346
BstKTI	GATC	4 cut(s)	81, 191, 237, 487
BstMAI	GTCTC	2 cut(s)	132, 384
BstMBI	GATC	4 cut(s)	78, 188, 234, 484
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 227, 236, 311
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	5 cut(s)	46, 183, 185, 254, 256
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	2 cut(s)	26, 76
BstX2I	RGATCY	2 cut(s)	188, 484
BstYI	RGATCY	2 cut(s)	188, 484
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	225, 396
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	46, 202, 223
CfoI	GCGC	6 cut(s)	46, 48, 185, 256, 314, 346
Cfr10I	RCCGGY	2 cut(s)	221, 305
Cfr13I	GGNCC	2 cut(s)	60, 224
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	115, 535
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	2 cut(s)	115, 535
DdeI	CTNAG	1 cut(s)	129
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	4 cut(s)	80, 190, 236, 486
DpnII	GATC	4 cut(s)	78, 188, 234, 484
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	526
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	575
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	1 cut(s)	445
FaiI	YATR	5 cut(s)	333, 416, 443, 551, 553
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	1 cut(s)	441
FauI	CCCGC	2 cut(s)	235, 276
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	6 cut(s)	45, 47, 184, 255, 313, 345
GluI	GCNGC	1 cut(s)	134
HaeII	RGCGCY	2 cut(s)	315, 347
HaeIII	GGCC	2 cut(s)	225, 396
HapII	CCGG	3 cut(s)	222, 306, 488
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	6 cut(s)	46, 48, 185, 256, 314, 346
Hin1I	GRCGYC	2 cut(s)	23, 344
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	6 cut(s)	44, 46, 183, 254, 312, 344
HinP1I	GCGC	6 cut(s)	44, 46, 183, 254, 312, 344
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	365, 434
HpaII	CCGG	3 cut(s)	222, 306, 488
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	369, 589
Hpy188I	TCNGA	2 cut(s)	78, 517
Hpy188III	TCNNGA	3 cut(s)	192, 298, 479
Hpy8I	GTNNAC	2 cut(s)	369, 589
Hpy99I	CGWCG	3 cut(s)	28, 261, 376
HpyAV	CCTTC	2 cut(s)	162, 250
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	3 cut(s)	23, 51, 259
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 227, 236, 311
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	3 cut(s)	23, 51, 259
Hsp92I	GRCGYC	2 cut(s)	23, 344
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	6 cut(s)	44, 46, 183, 254, 312, 344
KasI	GGCGCC	1 cut(s)	343
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	78, 188, 234, 484
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	3 cut(s)	23, 51, 259
MaeIII	GTNAC	2 cut(s)	4, 260
MalI	GATC	4 cut(s)	80, 190, 236, 486
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	4 cut(s)	78, 188, 234, 484
MflI	RGATCY	2 cut(s)	188, 484
MluCI	AATT	3 cut(s)	195, 319, 556
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	152, 275, 369, 450, 475, 521
MroNI	GCCGGC	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	222, 306, 488
MspR9I	CCNGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	5 cut(s)	46, 183, 185, 254, 256
MwoI	GCNNNNNNNGC	4 cut(s)	222, 227, 236, 311
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	344
NdeII	GATC	4 cut(s)	78, 188, 234, 484
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	3 cut(s)	226, 345, 486
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	4, 260
PalAI	GGCGCGCC	1 cut(s)	44
PauI	GCGCGC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 87
PctI	GAATGC	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	434
PflFI	GACNNNGTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	373
PluTI	GGCGCC	1 cut(s)	347
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	346
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	226, 345, 486
PspPI	GGNCC	2 cut(s)	60, 224
PsuI	RGATCY	2 cut(s)	188, 484
PsyI	GACNNNGTC	1 cut(s)	376
PteI	GCGCGC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	116, 536
RsaNI	GTAC	2 cut(s)	115, 535
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	4 cut(s)	78, 188, 234, 484
Sau96I	GGNCC	2 cut(s)	60, 224
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	345
SgsI	GGCGCGCC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	195, 319, 556
SsiI	CCGC	4 cut(s)	32, 228, 269, 452
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	3 cut(s)	26, 54, 262
TaqI	TCGA	6 cut(s)	193, 273, 297, 326, 360, 437
TasI	AATT	3 cut(s)	195, 319, 556
TatI	WGTACW	2 cut(s)	114, 534
TfiI	GAWTC	1 cut(s)	434
TseFI	GTSAC	2 cut(s)	4, 260
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	4, 260
TspDTI	ATGAA	2 cut(s)	162, 538
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	319
XmaJI	CCTAGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.