Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000458.1

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1131

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

cgtcgtccacctgttgatatcagaaaggggaagctgaatcttaaacttcagaaacagcacaactgtatcccagacgaacactatgtgcagacactgcttgcgatgagtgagcttgacggcgaacttgagcgaaggacattaacctatacattgtggagcaactctccaaataaaacagagagtaaaggctggcatcctatgactttcaaccatgccaatgcggcccctcaaaagattagggacataaaggggatcaaccatgtatactatgagacagaattccgaacagaatggtgtcgtataaattctactgttgttccctgttttttattcgcaaggaagttctccaagggtgctgccatgcgccttctgagcgagggagttgttggtcactttgacacagctgcattgttaaaaccatcaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

142

Amino Acids

16.35

Weight (kDa)

9.51

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	278, 304
AcuI	CTGAAG	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	3 cut(s)	34, 112, 404
AluI	AGCT	3 cut(s)	34, 112, 404
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	356, 404
ApoI	RAATTY	2 cut(s)	278, 304
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BbvI	GCAGC	2 cut(s)	343, 391
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	3 cut(s)	222, 357, 405
BlsI	GCNGC	3 cut(s)	223, 358, 406
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	343, 391
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	252
BssNAI	GTATAC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	65, 313
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	99, 191
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 221, 372
BstV1I	GCAGC	2 cut(s)	343, 391
BstZ17I	GTATAC	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	99, 191
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	4 cut(s)	212, 260, 361, 426
CviJI	RGCY	5 cut(s)	34, 112, 189, 224, 404
CviKI_1	RGCY	5 cut(s)	34, 112, 189, 224, 404
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	215, 263, 364, 429
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	211, 259, 360, 425
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	222, 357, 405
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	222, 357, 405
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	3 cut(s)	222, 357, 405
HaeIII	GGCC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	215, 263, 364, 429
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	8, 265
Hpy188I	TCNGA	4 cut(s)	23, 51, 284, 372
Hpy8I	GTNNAC	2 cut(s)	8, 265
HpyAV	CCTTC	2 cut(s)	126, 377
HpyCH4III	ACNGT	2 cut(s)	65, 313
HpyCH4V	TGCA	2 cut(s)	88, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 221, 372
HpyF3I	CTNAG	1 cut(s)	371
Hsp92II	CATG	4 cut(s)	215, 263, 364, 429
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	4 cut(s)	24, 84, 175, 334
Lsp1109I	GCAGC	2 cut(s)	343, 391
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MluCI	AATT	2 cut(s)	278, 304
MnlI	CCTC	2 cut(s)	237, 370
MseI	TTAA	3 cut(s)	42, 140, 413
MslI	CAYNNNNRTG	2 cut(s)	216, 424
MspA1I	CMGCKG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	94, 221, 372
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	215, 263, 364, 429
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	223, 358, 406
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	216, 424
SaqAI	TTAA	3 cut(s)	42, 140, 413
SatI	GCNGC	3 cut(s)	222, 357, 405
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	223
SetI	ASST	5 cut(s)	13, 36, 114, 146, 406
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	216, 424
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	278, 304
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	65, 313
TasI	AATT	2 cut(s)	278, 304
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	42, 140, 413
Tru9I	TTAA	3 cut(s)	42, 140, 413
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	356, 404
Tsp45I	GTSAC	1 cut(s)	389
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	2 cut(s)	278, 304
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.