Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Reverse (-)

31394067 .. 31395795

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATCGAAGCGGAGAGGCTGTTGTTCGCAACAGCTCTTGAGGATCCTGCGAATCAAAGATTTGTACTCCTTTCTGATAGTTGTGTTCCTCTGTACAACTTCAGCTATGTATACGGTTACATGATGGCTTCTCGCAGGAGTTTTGTGGACAGCTTTCTTGACGTAAAGGAGGGCCGCTACAATCCTAAAATGTCACCTTACATACCAAAAGAAAAATGGCGAAAAGGATCCCAGTGGATTGCTTTGGTACGAAGCCATGCAGAAGTCCTTGTGGACGACGATGTTGTTCTTCCAGTGTTCAAAAGTTTTTGCAAGCGTCGCCCGCCTGTGGATGCCAGAAAGGGGAAGCTGAATCTTAAACTTCAGAAGCAGCACAACTGTATCCCAGATGAACACTACGTGCAGACAGTGTTTGCGATGAGTGAGCTTGAAGGCGAACTTGAGCGAAGGACATTAACCTATTCGTTGTGGAACAATTCTGCTGCAACTAAAACCGAGAGTAAAGGCTGGCATCCTATGACTTTCAACCACGCGAATGCGGCTCCTAAAAAAATAAAAGAAATAAAGGATATCAACCACGTATACTATGAGACGGAATACCGGACAGAATGGTGTCGTGTCAATTCAACATACGTTCCTTGTTTCTTATTCGCAAGGAAATTCTCCCCGGGAGCTGCCATGCGCCTTCTTAGCGGGGGAGTAGTCGGTCAATTTGATACCTCTGCACTATTAAATCCGCCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

249

Amino Acids

28.6

Weight (kDa)

9.08

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	111, 582
AccII	CGCG	1 cut(s)	533
AciI	CCGC	6 cut(s)	11, 175, 323, 539, 693, 737
AclWI	GGATC	4 cut(s)	38, 51, 222, 235
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	2 cut(s)	85, 347
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	3 cut(s)	66, 95, 249
AfiI	CCNNNNNNNGG	2 cut(s)	328, 342
AgsI	TTSAA	4 cut(s)	301, 431, 526, 627
AluBI	AGCT	6 cut(s)	35, 105, 153, 349, 427, 674
AluI	AGCT	6 cut(s)	35, 105, 153, 349, 427, 674
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	4 cut(s)	38, 51, 222, 235
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	370, 482, 674
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	2 cut(s)	668, 669
AsuHPI	GGTGA	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	667
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BamHI	GGATCC	2 cut(s)	43, 227
BbvI	GCAGC	3 cut(s)	382, 469, 661
BccI	CCATC	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	392
BcnI	CCSGG	2 cut(s)	668, 669
BcoDI	GTCTC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	5 cut(s)	175, 371, 483, 540, 675
BlsI	GCNGC	5 cut(s)	176, 372, 484, 541, 676
Bme1390I	CCNGG	2 cut(s)	668, 669
BmeT110I	CYCGRG	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	45, 229, 543
BmrFI	CCNGG	2 cut(s)	668, 669
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	322, 520
BmuI	ACTGGG	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	59, 461
BpuMI	CCSGG	2 cut(s)	668, 669
BsaAI	YACGTR	2 cut(s)	400, 580
BsaJI	CCNNGG	2 cut(s)	666, 667
BsaWI	WCCGGW	1 cut(s)	600
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 342
Bse1I	ACTGG	2 cut(s)	232, 293
BseDI	CCNNGG	2 cut(s)	666, 667
BseGI	GGATG	2 cut(s)	337, 511
BseLI	CCNNNNNNNGG	2 cut(s)	328, 342
BseNI	ACTGG	2 cut(s)	232, 293
BseXI	GCAGC	3 cut(s)	382, 469, 661
BsgI	GTGCAG	2 cut(s)	422, 708
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	601, 668
BslI	CCNNNNNNNGG	2 cut(s)	328, 342
BsmAI	GTCTC	1 cut(s)	584
BsmBI	CGTCTC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	667
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	3, 43, 227
BspACI	CCGC	6 cut(s)	11, 175, 323, 539, 693, 737
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	3 cut(s)	45, 229, 543
BspPI	GGATC	4 cut(s)	38, 51, 222, 235
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	232, 293
BssECI	CCNNGG	2 cut(s)	666, 667
BssMI	GATC	3 cut(s)	3, 43, 227
BssNAI	GTATAC	2 cut(s)	112, 583
Bst1107I	GTATAC	2 cut(s)	112, 583
Bst4CI	ACNGT	3 cut(s)	116, 380, 409
BstAUI	TGTACA	1 cut(s)	93
BstBAI	YACGTR	2 cut(s)	400, 580
BstC8I	GCNNGC	3 cut(s)	314, 323, 509
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	337, 511
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	3 cut(s)	6, 46, 230
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	3, 43, 227
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 322, 539, 690
BstSCI	CCNGG	2 cut(s)	666, 667
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	382, 469, 661
BstX2I	RGATCY	2 cut(s)	43, 227
BstYI	RGATCY	2 cut(s)	43, 227
BstZ17I	GTATAC	2 cut(s)	112, 583
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	337, 511
BtsIMutI	CAGTG	3 cut(s)	239, 300, 414
Cac8I	GCNNGC	3 cut(s)	314, 323, 509
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	172
Cfr9I	CCCGGG	1 cut(s)	667
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	65, 94, 248
CviAII	CATG	4 cut(s)	121, 257, 679, 744
CviQI	GTAC	3 cut(s)	65, 94, 248
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	3 cut(s)	5, 45, 229
DpnII	GATC	3 cut(s)	3, 43, 227
DraIII	CACNNNGTG	1 cut(s)	400
EciI	GGCGGA	1 cut(s)	726
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	2 cut(s)	85, 347
Eco88I	CYCGRG	1 cut(s)	667
EcoRV	GATATC	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	4 cut(s)	124, 260, 682, 747
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	4 cut(s)	120, 256, 678, 743
FauI	CCCGC	2 cut(s)	330, 686
FblI	GTMKAC	2 cut(s)	111, 582
Fnu4HI	GCNGC	5 cut(s)	175, 371, 483, 540, 675
FokI	GGATG	2 cut(s)	344, 498
Fsp4HI	GCNGC	5 cut(s)	175, 371, 483, 540, 675
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	5 cut(s)	175, 371, 483, 540, 675
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	601, 668
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	124, 260, 682, 747
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HinfI	GANTC	2 cut(s)	52, 352
HpaII	CCGG	2 cut(s)	601, 668
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	4 cut(s)	112, 148, 274, 583
Hpy188I	TCNGA	2 cut(s)	76, 366
Hpy188III	TCNNGA	2 cut(s)	38, 158
Hpy8I	GTNNAC	4 cut(s)	112, 148, 274, 583
Hpy99I	CGWCG	2 cut(s)	281, 321
HpyAV	CCTTC	3 cut(s)	425, 441, 695
HpyCH4III	ACNGT	3 cut(s)	116, 380, 409
HpyCH4IV	ACGT	4 cut(s)	162, 399, 579, 633
HpyCH4V	TGCA	5 cut(s)	260, 312, 403, 485, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 322, 539, 690
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	4 cut(s)	162, 399, 579, 633
Hsp92II	CATG	4 cut(s)	124, 260, 682, 747
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	3, 43, 227
LmnI	GCTCC	2 cut(s)	547, 671
Lsp1109I	GCAGC	3 cut(s)	382, 469, 661
LweI	GCATC	2 cut(s)	322, 520
MaeII	ACGT	4 cut(s)	162, 399, 579, 633
MaeIII	GTNAC	2 cut(s)	116, 192
MalI	GATC	3 cut(s)	5, 45, 229
MboI	GATC	3 cut(s)	3, 43, 227
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	2 cut(s)	43, 227
MluCI	AATT	4 cut(s)	475, 622, 659, 710
MnlI	CCTC	5 cut(s)	9, 34, 99, 163, 730
MseI	TTAA	3 cut(s)	357, 455, 731
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	2 cut(s)	601, 668
MspR9I	CCNGG	2 cut(s)	668, 669
Mva1269I	GAATGC	1 cut(s)	541
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	4 cut(s)	318, 322, 539, 690
NciI	CCSGG	2 cut(s)	668, 669
NdeII	GATC	3 cut(s)	3, 43, 227
NlaIII	CATG	4 cut(s)	124, 260, 682, 747
NlaIV	GGNNCC	3 cut(s)	45, 229, 543
NmuCI	GTSAC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	52, 352
PkrI	GCNGC	5 cut(s)	176, 372, 484, 541, 676
Ppu21I	YACGTR	2 cut(s)	400, 580
PspN4I	GGNNCC	3 cut(s)	45, 229, 543
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	43, 227
RsaI	GTAC	3 cut(s)	66, 95, 249
RsaNI	GTAC	3 cut(s)	65, 94, 248
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	357, 455, 731
SatI	GCNGC	5 cut(s)	175, 371, 483, 540, 675
Sau3AI	GATC	3 cut(s)	3, 43, 227
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	668, 669
SfaNI	GCATC	2 cut(s)	322, 520
SmaI	CCCGGG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	38, 440
SmoI	CTYRAG	2 cut(s)	38, 440
Sse9I	AATT	4 cut(s)	475, 622, 659, 710
SsiI	CCGC	6 cut(s)	11, 175, 323, 539, 693, 737
StyD4I	CCNGG	2 cut(s)	666, 667
TaaI	ACNGT	3 cut(s)	116, 380, 409
TaiI	ACGT	4 cut(s)	165, 402, 582, 636
TaqI	TCGA	1 cut(s)	6
TaqII	GACCGA	1 cut(s)	695
TasI	AATT	4 cut(s)	475, 622, 659, 710
TatI	WGTACW	2 cut(s)	64, 93
TauI	GCSGC	2 cut(s)	177, 542
TfiI	GAWTC	2 cut(s)	52, 352
Tru1I	TTAA	3 cut(s)	357, 455, 731
Tru9I	TTAA	3 cut(s)	357, 455, 731
TscAI	CASTG	3 cut(s)	239, 300, 414
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	3 cut(s)	370, 482, 674
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	608
TspMI	CCCGGG	1 cut(s)	667
TspRI	CASTG	3 cut(s)	239, 300, 414
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmaI	CCCGGG	1 cut(s)	667
XmiI	GTMKAC	2 cut(s)	111, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.