Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Forward (+)

21737443 .. 21740027

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGACAAAGAAGAGAGCTTCATCACCCATGCGCCAACTTTTGAGGTTGGTTACAGGTCTCATCATCATTGTCAGTATCTTTCTATGTCTATTGGCTTTCCTTAGAGTGCTCCATTTTCAGTCCAAGCTCCCACCATCATTCTTCACGTCTCAGAGGTCTCATGCTTTCATTCATGAAGATCAGTTTAAAGGCCCTCCGAAAGTTGCCTTCCTCTTCCTCGTTCATCGGGATCTTCCTCTTTATTTTCTCTGGGACACCTTCTTCAAGAATGGCGATGTGGCAAAGTTCTCGATTTATATTCGTTCAGAGCCTGGTTTTGCATTTGATGAATCAACCACAAGTTCTGCTTTCTTTTACGGTCGACAGCTGAACAACAGCATTCAGGTAGTATGGGGAGAATCAAGTATGATAGAAGCAGAGCGCTTACTACTTGAAGAAGCTCTGTATGATCCAGCCAATCAAATATTTGCCCTTCTCTCAGATAGCTGTGTGCCTCTGTACAACTTCAGTTACATTTACAACTATGTAATGTCTTCTCCAAGAAGCTTTGTGGACAGCTTCATTGATGTTAAAGGATTTCGTTATGATCCGAAGATGTCACCTACTATGCCTGAGAAGAGATGGCGAAAAGGATCCCAGTGGATAACTTTGGTTAGAAGACATGCAGAAATTGTTGTCGACGACCATACGGTTTTCCCCGTCTTCAGGAAATTCTGTATGCGGCGGCCACCTATAGACCTGCGTTTGAAGAGGCAACTTCTTACAGTTCCGAAGTATCGCAATTGCATCCCAGATGAACATTACGTGCAGACATTACTTGCATCAACGATACCATGGAAAAGAAGGTCTTGGCACCCTATAACGTTTGATTATGCAGACGCAAGCCCTTGGAAGATGAGAGAAATTAAGGATATCGACCATGTATACTATGAGTACGAACAACACACCGAGTTCTGCCATACCGGTTCCAAAATCGCTTCATGTTACTTGTTTGCAAGAAAATTCACTGTCGGAGCTGCCATGCGCATTCTGAGAGAAGGTTTGATTGGTCCTTATGATGTTACTGCAATACCAAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

361

Amino Acids

42.24

Weight (kDa)

9.3

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1025
Acc36I	ACCTGC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	852
AccI	GTMKAC	3 cut(s)	361, 678, 924
AciI	CCGC	2 cut(s)	721, 724
AclI	AACGTT	1 cut(s)	863
AclWI	GGATC	5 cut(s)	237, 443, 581, 627, 640
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	2 cut(s)	710, 1001
AcuI	CTGAAG	2 cut(s)	490, 688
AfaI	GTAC	2 cut(s)	500, 935
AfeI	AGCGCT	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	705
AflIII	ACRYGT	1 cut(s)	1077
AgeI	ACCGGT	1 cut(s)	962
AgsI	TTSAA	3 cut(s)	265, 434, 748
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AluBI	AGCT	8 cut(s)	17, 127, 367, 440, 486, 546, 558, 1016
AluI	AGCT	8 cut(s)	17, 127, 367, 440, 486, 546, 558, 1016
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	62, 153, 162
AlwI	GGATC	5 cut(s)	237, 443, 581, 627, 640
AlwNI	CAGNNNCTG	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	422
AoxI	GGCC	2 cut(s)	190, 725
ApeKI	GCWGC	1 cut(s)	1016
ApoI	RAATTY	2 cut(s)	710, 1001
AsiGI	ACCGGT	1 cut(s)	962
AspLEI	GCGC	3 cut(s)	33, 423, 1026
AspS9I	GGNCC	2 cut(s)	191, 1049
AsuHPI	GGTGA	2 cut(s)	15, 591
AvaII	GGWCC	1 cut(s)	1049
BamHI	GGATCC	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	852
BbsI	GAAGAC	3 cut(s)	525, 664, 694
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	1003
BccI	CCATC	2 cut(s)	142, 615
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	3 cut(s)	62, 153, 162
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	747
BisI	GCNGC	3 cut(s)	722, 725, 1017
BlsI	GCNGC	3 cut(s)	723, 726, 1018
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	1049
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	191, 1049
BmiI	GGNNCC	3 cut(s)	634, 854, 967
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	2 cut(s)	795, 830
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	3 cut(s)	525, 664, 694
BsaAI	YACGTR	1 cut(s)	805
BsaI	GGTCTC	2 cut(s)	62, 162
BsaJI	CCNNGG	2 cut(s)	833, 887
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse118I	RCCGGY	1 cut(s)	962
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	833, 887
BseGI	GGATG	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMII	CTCAG	4 cut(s)	164, 492, 603, 1022
BseNI	ACTGG	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	1003
BsgI	GTGCAG	1 cut(s)	827
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	192, 727
BshNI	GGYRCC	1 cut(s)	852
BshTI	ACCGGT	1 cut(s)	962
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	963
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	3 cut(s)	62, 153, 162
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	2 cut(s)	378, 1026
BsnI	GGCC	2 cut(s)	192, 727
Bso31I	GGTCTC	2 cut(s)	62, 162
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	178, 229, 448, 586, 632
Bsp19I	CCATGG	1 cut(s)	833
BspACI	CCGC	2 cut(s)	721, 724
BspANI	GGCC	2 cut(s)	192, 727
BspCNI	CTCAG	4 cut(s)	163, 491, 604, 1023
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	634, 854, 967
BspMI	ACCTGC	1 cut(s)	747
BspPI	GGATC	5 cut(s)	237, 443, 581, 627, 640
BspT107I	GGYRCC	1 cut(s)	852
BspTNI	GGTCTC	2 cut(s)	62, 162
BsrFI	RCCGGY	1 cut(s)	962
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	962
BssECI	CCNNGG	2 cut(s)	833, 887
BssMI	GATC	5 cut(s)	178, 229, 448, 586, 632
BssNAI	GTATAC	1 cut(s)	925
BssT1I	CCWWGG	2 cut(s)	833, 887
Bst1107I	GTATAC	1 cut(s)	925
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	4 cut(s)	359, 691, 766, 1009
Bst6I	CTCTTC	4 cut(s)	5, 218, 611, 743
BstAUI	TGTACA	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	883
BstDEI	CTNAG	5 cut(s)	101, 150, 478, 612, 1031
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	1 cut(s)	786
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	3 cut(s)	33, 423, 1026
BstKTI	GATC	5 cut(s)	181, 232, 451, 589, 635
BstMAI	GTCTC	3 cut(s)	62, 153, 162
BstMBI	GATC	5 cut(s)	178, 229, 448, 586, 632
BstMCI	CGRYCG	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	2 cut(s)	665, 1081
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	1003
BstV2I	GAAGAC	3 cut(s)	525, 664, 694
BstX2I	RGATCY	2 cut(s)	229, 632
BstYI	RGATCY	2 cut(s)	229, 632
BstZ17I	GTATAC	1 cut(s)	925
BsuRI	GGCC	2 cut(s)	192, 727
BtgI	CCRYGG	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	644, 1005
BveI	ACCTGC	1 cut(s)	747
Cac8I	GCNNGC	1 cut(s)	883
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	3 cut(s)	33, 423, 1026
Cfr10I	RCCGGY	1 cut(s)	962
Cfr13I	GGNCC	2 cut(s)	191, 1049
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	499, 934
CspAI	ACCGGT	1 cut(s)	962
CviAII	CATG	9 cut(s)	28, 161, 173, 662, 834, 920, 981, 1021, 1078
CviQI	GTAC	2 cut(s)	499, 934
DdeI	CTNAG	5 cut(s)	101, 150, 478, 612, 1031
DpnI	GATC	5 cut(s)	180, 231, 450, 588, 634
DpnII	GATC	5 cut(s)	178, 229, 448, 586, 632
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	725
Eam1104I	CTCTTC	4 cut(s)	5, 218, 611, 743
EarI	CTCTTC	4 cut(s)	5, 218, 611, 743
Eco130I	CCWWGG	2 cut(s)	833, 887
Eco31I	GGTCTC	2 cut(s)	62, 162
Eco32I	GATATC	1 cut(s)	913
Eco47I	GGWCC	1 cut(s)	1049
Eco47III	AGCGCT	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	490, 688
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	913
EcoT14I	CCWWGG	2 cut(s)	833, 887
ErhI	CCWWGG	2 cut(s)	833, 887
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	9 cut(s)	31, 164, 176, 665, 837, 923, 984, 1024, 1081
FalI	AAGNNNNNCTT	4 cut(s)	331, 363, 832, 864
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	9 cut(s)	27, 160, 172, 661, 833, 919, 980, 1020, 1077
FblI	GTMKAC	3 cut(s)	361, 678, 924
Fnu4HI	GCNGC	3 cut(s)	722, 725, 1017
FokI	GGATG	1 cut(s)	773
Fsp4HI	GCNGC	3 cut(s)	722, 725, 1017
FspAI	RTGCGCAY	1 cut(s)	1025
FspI	TGCGCA	1 cut(s)	1025
GlaI	GCGC	3 cut(s)	32, 422, 1025
GluI	GCNGC	3 cut(s)	722, 725, 1017
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	192, 727
HapII	CCGG	1 cut(s)	963
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	3 cut(s)	33, 423, 1026
Hin1II	CATG	9 cut(s)	31, 164, 176, 665, 837, 923, 984, 1024, 1081
Hin6I	GCGC	3 cut(s)	31, 421, 1024
HinP1I	GCGC	3 cut(s)	31, 421, 1024
HincII	GTYRAC	2 cut(s)	362, 679
HindII	GTYRAC	2 cut(s)	362, 679
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	2 cut(s)	329, 398
HpaII	CCGG	1 cut(s)	963
HphI	GGTGA	2 cut(s)	15, 591
Hpy166II	GTNNAC	4 cut(s)	362, 553, 679, 925
Hpy188I	TCNGA	8 cut(s)	153, 198, 307, 481, 591, 771, 1013, 1032
Hpy188III	TCNNGA	5 cut(s)	173, 227, 265, 289, 706
Hpy8I	GTNNAC	4 cut(s)	362, 553, 679, 925
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	5 cut(s)	217, 268, 482, 837, 1031
HpyCH4III	ACNGT	4 cut(s)	359, 691, 766, 1009
HpyCH4IV	ACGT	3 cut(s)	146, 804, 863
HpyCH4V	TGCA	8 cut(s)	320, 665, 786, 808, 821, 875, 995, 1067
HpyF3I	CTNAG	5 cut(s)	101, 150, 478, 612, 1031
HpySE526I	ACGT	3 cut(s)	146, 804, 863
Hsp92II	CATG	9 cut(s)	31, 164, 176, 665, 837, 923, 984, 1024, 1081
HspAI	GCGC	3 cut(s)	31, 421, 1024
Kzo9I	GATC	5 cut(s)	178, 229, 448, 586, 632
LmnI	GCTCC	3 cut(s)	114, 132, 1013
Lsp1109I	GCAGC	1 cut(s)	1003
LweI	GCATC	2 cut(s)	795, 830
MaeII	ACGT	3 cut(s)	146, 804, 863
MaeIII	GTNAC	5 cut(s)	49, 509, 597, 983, 1060
MalI	GATC	5 cut(s)	180, 231, 450, 588, 634
MboI	GATC	5 cut(s)	178, 229, 448, 586, 632
MfeI	CAATTG	1 cut(s)	781
MflI	RGATCY	2 cut(s)	229, 632
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	669, 710, 781, 903, 1001
MmeI	TCCRAC	1 cut(s)	991
MnlI	CCTC	8 cut(s)	36, 147, 204, 221, 227, 246, 504, 744
MseI	TTAA	3 cut(s)	186, 570, 906
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	963
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	781
Mva1269I	GAATGC	2 cut(s)	378, 1026
MvaI	CCWGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	833
NdeII	GATC	5 cut(s)	178, 229, 448, 586, 632
NlaIII	CATG	9 cut(s)	31, 164, 176, 665, 837, 923, 984, 1024, 1081
NlaIV	GGNNCC	3 cut(s)	634, 854, 967
NmuCI	GTSAC	1 cut(s)	597
NsbI	TGCGCA	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	665, 1081
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	1077
PctI	GAATGC	2 cut(s)	378, 1026
PfeI	GAWTC	2 cut(s)	329, 398
PinAI	ACCGGT	1 cut(s)	962
PkrI	GCNGC	3 cut(s)	723, 726, 1018
Ppu21I	YACGTR	1 cut(s)	805
PscI	ACATGT	1 cut(s)	1077
Psp1406I	AACGTT	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	634, 854, 967
PspPI	GGNCC	2 cut(s)	191, 1049
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	229, 632
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	500, 935
RsaNI	GTAC	2 cut(s)	499, 934
SalI	GTCGAC	2 cut(s)	360, 677
SaqAI	TTAA	3 cut(s)	186, 570, 906
SatI	GCNGC	3 cut(s)	722, 725, 1017
Sau3AI	GATC	5 cut(s)	178, 229, 448, 586, 632
Sau96I	GGNCC	2 cut(s)	191, 1049
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	795, 830
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	1049
Sse9I	AATT	5 cut(s)	669, 710, 781, 903, 1001
SsiI	CCGC	2 cut(s)	721, 724
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	833, 887
TaaI	ACNGT	4 cut(s)	359, 691, 766, 1009
TaiI	ACGT	3 cut(s)	149, 807, 866
TaqI	TCGA	4 cut(s)	290, 361, 678, 915
TasI	AATT	5 cut(s)	669, 710, 781, 903, 1001
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	724, 727
TfiI	GAWTC	2 cut(s)	329, 398
Tru1I	TTAA	3 cut(s)	186, 570, 906
Tru9I	TTAA	3 cut(s)	186, 570, 906
TscAI	CASTG	2 cut(s)	644, 1012
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	1 cut(s)	1016
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	9 cut(s)	9, 157, 161, 189, 212, 342, 550, 810, 969
TspRI	CASTG	2 cut(s)	644, 1012
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	710, 1001
XceI	RCATGY	2 cut(s)	665, 1081
XmiI	GTMKAC	3 cut(s)	361, 678, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.