Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004188.1

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Reverse (-)

74748 .. 75427

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004188.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgacaaagagaagggcttcatcaccgatgcgccaactttcgaggttgaggtcaagactcatcatcatcctctgtgtctcgctatgtgtactggctctacttagagtagtatttcattatgagtccaacctccagtcctcattccccacctctagaagaaggtctcgtgcttttattgatattcagtttgttggccctccaaaggttgcttttctcttcctggttcggcgggatctccctcttgattttctctggggtaccttcttcaagaatggtgatggagcaaaattctccatttacgttcattcagagcctggttttgtgtttgatggatcaaccacaaggtctgcattcttctttggtcgacagttaaacaacagcattcgggtagtatggggagaatcaagtatgatcgaagcagagcggttactatttgaagaagctctttatgatccagccaatcaaagatttgtccttctctcagataggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

163

Amino Acids

18.86

Weight (kDa)

10.54

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	2 cut(s)	229, 424
AclWI	GGATC	3 cut(s)	240, 340, 446
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	2 cut(s)	90, 259
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	268, 437
AjnI	CCWGG	2 cut(s)	219, 313
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	82, 168
AlwI	GGATC	3 cut(s)	240, 340, 446
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	15, 287
BanI	GGYRCC	1 cut(s)	257
BauI	CACGAG	1 cut(s)	165
BccI	CCATC	2 cut(s)	272, 323
BciT130I	CCWGG	2 cut(s)	221, 315
BcoDI	GTCTC	2 cut(s)	82, 168
BfaI	CTAG	1 cut(s)	153
Bme1390I	CCNGG	2 cut(s)	221, 315
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	221, 315
BmsI	GCATC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	96, 133
BseBI	CCWGG	2 cut(s)	221, 315
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	96, 133
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	82, 168
BsmI	GAATGC	2 cut(s)	350, 381
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	232, 332, 411, 451
BspACI	CCGC	2 cut(s)	229, 424
BspANI	GGCC	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	240, 340, 446
BspT107I	GGYRCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	96, 133
BssMI	GATC	4 cut(s)	232, 332, 411, 451
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	221, 315
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	101, 481
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	235, 335, 414, 454
BstMAI	GTCTC	2 cut(s)	82, 168
BstMBI	GATC	4 cut(s)	232, 332, 411, 451
BstNI	CCWGG	2 cut(s)	221, 315
BstSCI	CCNGG	2 cut(s)	219, 313
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	89, 258
CviJI	RGCY	6 cut(s)	17, 95, 195, 313, 443, 458
CviKI_1	RGCY	6 cut(s)	17, 95, 195, 313, 443, 458
CviQI	GTAC	2 cut(s)	89, 258
DdeI	CTNAG	2 cut(s)	101, 481
DpnI	GATC	4 cut(s)	234, 334, 413, 453
DpnII	GATC	4 cut(s)	232, 332, 411, 451
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	219, 313
FaiI	YATR	5 cut(s)	85, 120, 394, 410, 450
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FauI	CCCGC	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	364
FokI	GGATG	1 cut(s)	53
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	3 cut(s)	57, 122, 401
HphI	GGTGA	2 cut(s)	15, 287
Hpy166II	GTNNAC	2 cut(s)	89, 365
Hpy188I	TCNGA	2 cut(s)	310, 484
Hpy188III	TCNNGA	4 cut(s)	54, 153, 242, 268
Hpy8I	GTNNAC	2 cut(s)	89, 365
HpyAV	CCTTC	4 cut(s)	6, 153, 271, 485
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	101, 481
HpySE526I	ACGT	1 cut(s)	300
HspAI	GCGC	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	232, 332, 411, 451
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	8 cut(s)	77, 146, 206, 233, 238, 300, 327, 468
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	4 cut(s)	234, 334, 413, 453
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	4 cut(s)	232, 332, 411, 451
MboII	GAAGA	5 cut(s)	168, 208, 256, 346, 449
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	51, 131
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	36, 42, 80, 140, 148, 160, 207, 249
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	221, 315
Mva1269I	GAATGC	2 cut(s)	350, 381
MvaI	CCWGG	2 cut(s)	221, 315
NdeII	GATC	4 cut(s)	232, 332, 411, 451
NlaIV	GGNNCC	1 cut(s)	259
PctI	GAATGC	2 cut(s)	350, 381
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	401
PleI	GAGTC	2 cut(s)	51, 130
PpsI	GAGTC	2 cut(s)	51, 130
Psp6I	CCWGG	2 cut(s)	219, 313
PspGI	CCWGG	2 cut(s)	219, 313
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	90, 259
RsaNI	GTAC	2 cut(s)	89, 258
SalI	GTCGAC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	4 cut(s)	232, 332, 411, 451
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	51, 131
ScrFI	CCNGG	2 cut(s)	221, 315
SfaNI	GCATC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	229, 424
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	219, 313
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	41, 364, 414
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	9, 104, 293
XapI	RAATTY	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	16
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.