Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017945.1

Orthogroup ID

OG0002602

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1155

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 581 bp

atggtgacgatgacgaagaagacgtcgccaccgccaatcacggcgcgccacgtgatcaggtccagctggaagcttctgatcgtcttctccgtcttgctctgcgttttggctctgtacaggtttcagtctcatcagccagacctctactctccttcttcttcttcttcttcattatctcgcgcgagatctcgaattgctcgccacagcgtcagcttcgccggccccgccaagatcgccttcctatttctcgcgcgacgtgacctcccgctcgattttctttgggagagcttcttcgagaatgccggtggcgctttgaatttttcgatttatattcactcggcgcctggttttgtgttcgatgagtccacgacgaggtctcgcttctttcacggccgtcagttgccgaatagcatacaggtgggatggggagaatcgagcatgattgaagcggagaggttgttgtttgcaacagctcttgaggatccggcaaatcaaagatttgttctcctctctgacagttgcgttcctttgtacaacttcagcttcatatacaattacctgatggcttctcctaggagtat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

193

Amino Acids

21.8

Weight (kDa)

9.69

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11940 AT1G11940 AT1G62305 AT1G62305 AT1G62305
fragaria_vesca	FvH4_3g01580 FvH4_3g01580 FvH4_3g01580 FvH4_6g42672 FvH4_6g42672
malus_domestica	MD05G1350900.v1.1 MD09G1071200.v1.1
prunus_persica	Prupe.3G213600_v2.0.a1 Prupe.4G016500_v2.0.a1 Prupe.4G016500_v2.0.a1
pyrus_communis	pycom05g31820
rosa_chinensis	RchiOBHm_Chr2g0158591 RchiOBHm_Chr5g0002391
rosa_laevigata	RLG00000021099 RLG00000031028
rosa_multiflora	Rmu_sc0004188.1_g000020 Rmu_sc0006137.1_g000001 Rmu_sc0017945.1_g000001 Rmu_ssc0000458.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073460 Rroxscaffold_2G00091180
rosa_rugosa	Rorug02G0470900 Rorug02G0471000 Rorug04G0395900 Rorug04G0395900
rosa_samantha	Rh2AG536500 Rh2BG549600 Rh2CG520200 Rh2DG559300 Rh5AG018700 Rh5BG021500 Rh5CG020600 Rh5DG019700
rosa_wichuraiana	Rw2G044410 Rw5G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	268
AccII	CGCG	5 cut(s)	46, 180, 182, 251, 253
AciI	CCGC	4 cut(s)	32, 225, 266, 449
AclWI	GGATC	2 cut(s)	476, 489
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	523
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	2 cut(s)	23, 341
AfaI	GTAC	2 cut(s)	116, 533
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	316, 446
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	6 cut(s)	66, 73, 213, 288, 473, 543
AluI	AGCT	6 cut(s)	66, 73, 213, 288, 473, 543
Alw26I	GTCTC	2 cut(s)	132, 381
AlwI	GGATC	2 cut(s)	476, 489
AoxI	GGCC	2 cut(s)	220, 391
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AscI	GGCGCGCC	1 cut(s)	44
AspA2I	CCTAGG	1 cut(s)	572
AspLEI	GCGC	6 cut(s)	46, 48, 182, 253, 311, 343
AspS9I	GGNCC	2 cut(s)	60, 221
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	60
AvrII	CCTAGG	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	340
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	2 cut(s)	26, 76
BccI	CCATC	2 cut(s)	417, 556
BceAI	ACGGC	3 cut(s)	57, 378, 406
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	132, 381
BfaI	CTAG	1 cut(s)	573
BfoI	RGCGCY	2 cut(s)	312, 344
BglII	AGATCT	1 cut(s)	185
BlnI	CCTAGG	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	60, 221
BmiI	GGNNCC	3 cut(s)	223, 342, 483
BmrFI	CCNGG	1 cut(s)	345
BpiI	GAAGAC	2 cut(s)	26, 76
BpuEI	CTTGAG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	23, 341
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	2 cut(s)	218, 302
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	372
BsePI	GCGCGC	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	391
Bsh1236I	CGCG	5 cut(s)	46, 180, 182, 251, 253
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	222, 393
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	219, 303, 485
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	132, 381
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	222, 393
Bso31I	GGTCTC	1 cut(s)	381
Bsp1407I	TGTACA	2 cut(s)	114, 531
Bsp143I	GATC	5 cut(s)	54, 78, 185, 231, 481
BspACI	CCGC	4 cut(s)	32, 225, 266, 449
BspANI	GGCC	2 cut(s)	222, 393
BspFNI	CGCG	5 cut(s)	46, 180, 182, 251, 253
BspLI	GGNNCC	3 cut(s)	223, 342, 483
BspPI	GGATC	2 cut(s)	476, 489
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	268
BsrFI	RCCGGY	2 cut(s)	218, 302
BsrGI	TGTACA	2 cut(s)	114, 531
BssAI	RCCGGY	2 cut(s)	218, 302
BssECI	CCNNGG	1 cut(s)	572
BssHII	GCGCGC	1 cut(s)	44
BssMI	GATC	5 cut(s)	54, 78, 185, 231, 481
BssNI	GRCGYC	2 cut(s)	23, 341
BssT1I	CCWWGG	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	518
BstACI	GRCGYC	2 cut(s)	23, 341
BstAUI	TGTACA	2 cut(s)	114, 531
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	46, 199, 220
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	5 cut(s)	46, 180, 182, 251, 253
BstH2I	RGCGCY	2 cut(s)	312, 344
BstHHI	GCGC	6 cut(s)	46, 48, 182, 253, 311, 343
BstKTI	GATC	5 cut(s)	57, 81, 188, 234, 484
BstMAI	GTCTC	2 cut(s)	132, 381
BstMBI	GATC	5 cut(s)	54, 78, 185, 231, 481
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 224, 233, 308
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	5 cut(s)	46, 180, 182, 251, 253
BstV2I	GAAGAC	2 cut(s)	26, 76
BstX2I	RGATCY	2 cut(s)	185, 481
BstYI	RGATCY	2 cut(s)	185, 481
BstZI	CGGCCG	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	222, 393
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	46, 199, 220
CfoI	GCGC	6 cut(s)	46, 48, 182, 253, 311, 343
Cfr10I	RCCGGY	2 cut(s)	218, 302
Cfr13I	GGNCC	2 cut(s)	60, 221
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	115, 532
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	2 cut(s)	115, 532
DinI	GGCGCC	1 cut(s)	342
DpnI	GATC	5 cut(s)	56, 80, 187, 233, 483
DpnII	GATC	5 cut(s)	54, 78, 185, 231, 481
EaeI	YGGCCR	1 cut(s)	391
EagI	CGGCCG	1 cut(s)	391
EclXI	CGGCCG	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	572
EgeI	GGCGCC	1 cut(s)	342
EheI	GGCGCC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	1 cut(s)	442
FaiI	YATR	5 cut(s)	330, 413, 440, 548, 550
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	232, 273
FbaI	TGATCA	1 cut(s)	54
FokI	GGATG	1 cut(s)	435
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	6 cut(s)	45, 47, 181, 252, 310, 342
HaeII	RGCGCY	2 cut(s)	312, 344
HaeIII	GGCC	2 cut(s)	222, 393
HapII	CCGG	3 cut(s)	219, 303, 485
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	6 cut(s)	46, 48, 182, 253, 311, 343
Hin1I	GRCGYC	2 cut(s)	23, 341
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	6 cut(s)	44, 46, 180, 251, 309, 341
HinP1I	GCGC	6 cut(s)	44, 46, 180, 251, 309, 341
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	362, 431
HpaII	CCGG	3 cut(s)	219, 303, 485
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	2 cut(s)	78, 514
Hpy188III	TCNNGA	3 cut(s)	189, 295, 476
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	3 cut(s)	28, 258, 373
HpyAV	CCTTC	2 cut(s)	162, 247
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	3 cut(s)	23, 51, 256
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 224, 233, 308
HpySE526I	ACGT	3 cut(s)	23, 51, 256
Hsp92I	GRCGYC	2 cut(s)	23, 341
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	6 cut(s)	44, 46, 180, 251, 309, 341
KasI	GGCGCC	1 cut(s)	340
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	54, 78, 185, 231, 481
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	3 cut(s)	23, 51, 256
MaeIII	GTNAC	2 cut(s)	4, 257
MalI	GATC	5 cut(s)	56, 80, 187, 233, 483
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	5 cut(s)	54, 78, 185, 231, 481
MboII	GAAGA	9 cut(s)	28, 31, 76, 147, 150, 153, 156, 159, 283
MflI	RGATCY	2 cut(s)	185, 481
MluCI	AATT	3 cut(s)	192, 316, 553
Mly113I	GGCGCC	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	152, 272, 366, 447, 472, 518
MroNI	GCCGGC	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	219, 303, 485
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	5 cut(s)	46, 180, 182, 251, 253
MwoI	GCNNNNNNNGC	4 cut(s)	219, 224, 233, 308
NaeI	GCCGGC	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	341
NdeII	GATC	5 cut(s)	54, 78, 185, 231, 481
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	3 cut(s)	223, 342, 483
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	4, 257
PalAI	GGCGCGCC	1 cut(s)	44
PauI	GCGCGC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 87
PctI	GAATGC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	370
PluTI	GGCGCC	1 cut(s)	344
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	223, 342, 483
PspPI	GGNCC	2 cut(s)	60, 221
PsuI	RGATCY	2 cut(s)	185, 481
PsyI	GACNNNGTC	1 cut(s)	373
PteI	GCGCGC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	116, 533
RsaNI	GTAC	2 cut(s)	115, 532
RseI	CAYNNNNRTG	1 cut(s)	416
Sau3AI	GATC	5 cut(s)	54, 78, 185, 231, 481
Sau96I	GGNCC	2 cut(s)	60, 221
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	342
SgsI	GGCGCGCC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	192, 316, 553
SsiI	CCGC	4 cut(s)	32, 225, 266, 449
SspDI	GGCGCC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	3 cut(s)	26, 54, 259
TaqI	TCGA	6 cut(s)	190, 270, 294, 323, 357, 434
TasI	AATT	3 cut(s)	192, 316, 553
TatI	WGTACW	2 cut(s)	114, 531
TfiI	GAWTC	1 cut(s)	431
TseFI	GTSAC	2 cut(s)	4, 257
Tsp45I	GTSAC	2 cut(s)	4, 257
TspDTI	ATGAA	2 cut(s)	159, 535
TspGWI	ACGGA	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	316
XmaJI	CCTAGG	1 cut(s)	572
XspI	CTAG	1 cut(s)	573
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.