AT1G62305

Core-2 I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002602
Physical Location & Seq
Reverse (-)
23026692 .. 23029531
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62305.1

Sequence Viewer

Length: 1137 bp
ATGCCGCGGCTTCCGTCGTCTCGTCGCGGTGTCGTGTGGTTTCGATGGAAGATACTCATCACTATCTCCACCGCATTATGCATCCTCGCTCTCTTCTGTATCAACCGTCAGTCTAATTCCACTGCGACGACGACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTCGTATCCCTCTCGTTAAATACTCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGTGATTTGCCACTTGATTTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCAGAGGAATTTCTCAATCTATGTACATTCAATACCTGGTTTCGTATTCGATGAATCATCCACAAGATCACATTTCTTCTACAATCGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTGGAAGATCCTTCTAATCAAAGATTTGTTCTTTTGTCTGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCTAGTTTCTTCACCAAAGAGTTTTGTAGACAGCTTCCTTGATAAAGATAATCGCTACACTATGAAAATGTTTCCTGTTATACGGAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATTGATCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTTAAAAAGAGGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAAAAGCTGAAGCTAAATCTTGGCATCCTCTCACTTTCACATCTGACAATTGCGGACCAGAGGAAATAGAAGGAATAAAGAAAATCAACCATGTATATTATGAATCGGAGTATCGAACAGAATGGTGCAGAGCGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGAGCCGCAATGCGTCTTTTGAGTGAAGGATTAATAGAATCCTCTATAGATACAACAACCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

378

Amino Acids

44.2

Weight (kDa)

9.6

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 70 - 322 3.3e-72 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 558
AccII CGCG 3 cut(s) 7, 27, 161
AciI CCGC 6 cut(s) 5, 7, 27, 72, 942, 1077
AclWI GGATC 4 cut(s) 449, 643, 734, 747
AcsI RAATTY 3 cut(s) 289, 713, 1024
AcuI CTGAAG 1 cut(s) 918
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 4 cut(s) 271, 312, 376, 1029
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 492, 564, 896, 902
AluI AGCT 4 cut(s) 492, 564, 896, 902
Alw26I GTCTC 2 cut(s) 24, 153
AlwI GGATC 4 cut(s) 449, 643, 734, 747
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 3 cut(s) 289, 713, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AseI ATTAAT 1 cut(s) 1103
AspS9I GGNCC 1 cut(s) 944
AsuHPI GGTGA 1 cut(s) 534
AvaII GGWCC 1 cut(s) 944
BaeI ACNNNNGTAYC 2 cut(s) 769, 802
BamHI GGATCC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 2 cut(s) 182, 797
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 2 cut(s) 24, 153
BfaI CTAG 2 cut(s) 533, 1068
BfmI CTRYAG 1 cut(s) 1116
BfuI GTATCC 2 cut(s) 182, 797
BglII AGATCT 1 cut(s) 164
BisI GCNGC 4 cut(s) 5, 8, 420, 1077
BlsI GCNGC 4 cut(s) 6, 9, 421, 1078
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 944
BmiI GGNNCC 3 cut(s) 741, 878, 1075
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 3 cut(s) 90, 449, 922
BpiI GAAGAC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 1086
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 81, 338, 913
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 1 cut(s) 653
BseRI GAGGAG 1 cut(s) 1086
BseXI GCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 297, 1036
Bsh1236I CGCG 3 cut(s) 7, 27, 161
Bsh1285I CGRYCG 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 3 cut(s) 186, 272, 1022
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 2 cut(s) 24, 153
BsmBI CGTCTC 2 cut(s) 24, 153
BsmFI GGGAC 3 cut(s) 186, 272, 1022
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
Bsp68I TCGCGA 1 cut(s) 161
BspACI CCGC 6 cut(s) 5, 7, 27, 72, 942, 1077
BspCNI CTCAG 1 cut(s) 652
BspFNI CGCG 3 cut(s) 7, 27, 161
BspLI GGNNCC 3 cut(s) 741, 878, 1075
BspPI GGATC 4 cut(s) 449, 643, 734, 747
BsrDI GCAATG 1 cut(s) 1086
BsrGI TGTACA 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 5 cut(s) 107, 141, 694, 785, 859
Bst6I CTCTTC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 438, 722
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 3 cut(s) 81, 338, 913
BstFNI CGCG 3 cut(s) 7, 27, 161
BstKTI GATC 9 cut(s) 167, 199, 283, 350, 457, 638, 657, 728, 742
BstMAI GTCTC 2 cut(s) 24, 153
BstMBI GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 1116
BstUI CGCG 3 cut(s) 7, 27, 161
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 4 cut(s) 164, 454, 635, 739
BstYI RGATCY 4 cut(s) 164, 454, 635, 739
BsuI GTATCC 2 cut(s) 182, 797
BtgI CCRYGG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 3 cut(s) 81, 338, 913
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 4 cut(s) 120, 137, 647, 864
BtuMI TCGCGA 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 438, 722
Cfr13I GGNCC 1 cut(s) 944
Cfr42I CCGCGG 1 cut(s) 8
CseI GACGC 1 cut(s) 1073
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 1 cut(s) 305
CviAII CATG 4 cut(s) 412, 665, 873, 980
CviJI RGCY 9 cut(s) 10, 492, 564, 663, 757, 831, 896, 902, 1076
CviKI_1 RGCY 9 cut(s) 10, 492, 564, 663, 757, 831, 896, 902, 1076
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 639
DpnI GATC 9 cut(s) 166, 198, 282, 349, 456, 637, 656, 727, 741
DpnII GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
DraIII CACNNNGTG 1 cut(s) 805
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco32I GATATC 2 cut(s) 530, 648
Eco47I GGWCC 1 cut(s) 944
Eco57I CTGAAG 1 cut(s) 918
EcoRI GAATTC 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 2 cut(s) 530, 648
EcoT22I ATGCAT 1 cut(s) 83
Esp3I CGTCTC 2 cut(s) 24, 153
FaeI CATG 4 cut(s) 415, 668, 876, 983
FaqI GGGAC 3 cut(s) 186, 272, 1022
FatI CATG 4 cut(s) 411, 664, 872, 979
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 4 cut(s) 5, 8, 420, 1077
FokI GGATG 3 cut(s) 68, 325, 900
Fsp4HI GCNGC 4 cut(s) 5, 8, 420, 1077
FspBI CTAG 2 cut(s) 533, 1068
GluI GCNGC 4 cut(s) 5, 8, 420, 1077
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 1073
Hin1II CATG 4 cut(s) 415, 668, 876, 983
HinfI GANTC 5 cut(s) 264, 335, 404, 992, 1109
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 534
Hpy166II GTNNAC 2 cut(s) 559, 1065
Hpy188I TCNGA 6 cut(s) 285, 487, 659, 711, 934, 997
Hpy188III TCNNGA 3 cut(s) 160, 271, 737
Hpy8I GTNNAC 2 cut(s) 559, 1065
Hpy99I CGWCG 7 cut(s) 19, 27, 130, 133, 136, 161, 234
HpyAV CCTTC 4 cut(s) 223, 468, 953, 1091
HpyCH4III ACNGT 5 cut(s) 107, 141, 694, 785, 859
HpyCH4IV ACGT 2 cut(s) 232, 804
HpyCH4V TGCA 8 cut(s) 81, 278, 419, 440, 668, 720, 808, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 2 cut(s) 232, 804
Hsp92II CATG 4 cut(s) 415, 668, 876, 983
Ksp22I TGATCA 1 cut(s) 654
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
LmnI GCTCC 1 cut(s) 1073
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 3 cut(s) 90, 449, 922
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 2 cut(s) 533, 1068
MaeII ACGT 2 cut(s) 232, 804
MaeIII GTNAC 2 cut(s) 515, 859
MalI GATC 9 cut(s) 166, 198, 282, 349, 456, 637, 656, 727, 741
MboI GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
MboII GAAGA 8 cut(s) 61, 85, 135, 259, 349, 388, 464, 531
MfeI CAATTG 2 cut(s) 371, 937
MflI RGATCY 4 cut(s) 164, 454, 635, 739
MluCI AATT 7 cut(s) 115, 289, 371, 713, 751, 937, 1024
Mph1103I ATGCAT 1 cut(s) 83
MseI TTAA 4 cut(s) 183, 681, 765, 1103
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 2 cut(s) 371, 937
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 3 cut(s) 7, 27, 161
MwoI GCNNNNNNNGC 1 cut(s) 893
NdeII GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
NlaIII CATG 4 cut(s) 415, 668, 876, 983
NlaIV GGNNCC 3 cut(s) 741, 878, 1075
NmuCI GTSAC 1 cut(s) 859
NruI TCGCGA 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 83
PfeI GAWTC 5 cut(s) 264, 335, 404, 992, 1109
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 4 cut(s) 6, 9, 421, 1078
Ple19I CGATCG 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 805
PshBI ATTAAT 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 741, 878, 1075
PspPI GGNCC 1 cut(s) 944
PsuI RGATCY 4 cut(s) 164, 454, 635, 739
PsyI GACNNNGTC 1 cut(s) 139
PvuI CGATCG 1 cut(s) 199
RruI TCGCGA 1 cut(s) 161
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 4 cut(s) 183, 681, 765, 1103
SatI GCNGC 4 cut(s) 5, 8, 420, 1077
Sau3AI GATC 9 cut(s) 164, 196, 280, 347, 454, 635, 654, 725, 739
Sau96I GGNCC 1 cut(s) 944
ScrFI CCNGG 1 cut(s) 318
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 3 cut(s) 90, 449, 922
SfcI CTRYAG 1 cut(s) 1116
Sfr303I CCGCGG 1 cut(s) 8
SgrBI CCGCGG 1 cut(s) 8
SinI GGWCC 1 cut(s) 944
Sse9I AATT 7 cut(s) 115, 289, 371, 713, 751, 937, 1024
SsiI CCGC 6 cut(s) 5, 7, 27, 72, 942, 1077
SspMI CTAG 2 cut(s) 533, 1068
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 5 cut(s) 107, 141, 694, 785, 859
TaiI ACGT 2 cut(s) 235, 807
TaqI TCGA 4 cut(s) 43, 229, 330, 1003
TasI AATT 7 cut(s) 115, 289, 371, 713, 751, 937, 1024
TatI WGTACW 1 cut(s) 304
TauI GCSGC 3 cut(s) 7, 10, 1079
TfiI GAWTC 5 cut(s) 264, 335, 404, 992, 1109
Tru1I TTAA 4 cut(s) 183, 681, 765, 1103
Tru9I TTAA 4 cut(s) 183, 681, 765, 1103
TscAI CASTG 4 cut(s) 127, 144, 647, 864
TseFI GTSAC 1 cut(s) 859
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 5 cut(s) 348, 608, 810, 855, 1005
TspGWI ACGGA 4 cut(s) 145, 489, 628, 865
TspRI CASTG 4 cut(s) 127, 144, 647, 864
Tth111I GACNNNGTC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 944
VspI ATTAAT 1 cut(s) 1103
XapI RAATTY 3 cut(s) 289, 713, 1024
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 533, 1068
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.