Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

5248664 .. 5249676

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTAAAGGAACAGGGAGCTTTGGTAAGAGGAGGAACAAGTCACACACGCTCTGTGTGAGATGTGGTCGCCGGAGCTTTCACATCCAGAAGAGTCGTTGCTCGGCATGTGCTTATCCAGCTGCCAGAAAGAGGACATATAACTGGAGTGTGAAGGCAATAAGAAGAAAGACAACAGGAACTGGTAGGATGAGGTATCTCCGTAATGTCCCTCGAAGGTTCAAGACTTGCTTTAGAGAAGGTACGCAAGCCACCCCAAGAAACAAAGCTGCAGCTTCGTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

95

Amino Acids

10.82

Weight (kDa)

11.86

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	2e-26	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	5 cut(s)	21, 78, 122, 269, 275
AluI	AGCT	5 cut(s)	21, 78, 122, 269, 275
AlwNI	CAGNNNCTG	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	122, 269, 272
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	109, 256, 284
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	123, 270, 273
BlsI	GCNGC	3 cut(s)	124, 271, 274
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	149, 187
BseGI	GGATG	2 cut(s)	84, 195
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	149, 187
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	109, 256, 284
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	149, 187
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	84, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	109, 256, 284
BstV2I	GAAGAC	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	84, 195
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	6 cut(s)	21, 78, 122, 251, 269, 275
CviKI_1	RGCY	6 cut(s)	21, 78, 122, 251, 269, 275
CviQI	GTAC	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	111
FaiI	YATR	3 cut(s)	109, 139, 141
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	123, 270, 273
FokI	GGATG	2 cut(s)	71, 202
Fsp4HI	GCNGC	3 cut(s)	123, 270, 273
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	3 cut(s)	123, 270, 273
GsuI	CTGGAG	1 cut(s)	166
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	88, 223
HpyAV	CCTTC	3 cut(s)	148, 210, 233
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	18, 75
LpnPI	CCDG	7 cut(s)	86, 101, 130, 132, 139, 162, 168
Lsp1109I	GCAGC	3 cut(s)	109, 256, 284
MaeI	CTAG	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	42
MboII	GAAGA	3 cut(s)	103, 177, 273
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	24, 27, 126, 186, 222
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	124, 271, 274
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SatI	GCNGC	3 cut(s)	123, 270, 273
SchI	GAGTC	1 cut(s)	103
SetI	ASST	8 cut(s)	23, 80, 124, 197, 221, 244, 271, 277
SfcI	CTRYAG	1 cut(s)	270
SspMI	CTAG	1 cut(s)	286
TaqI	TCGA	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	3 cut(s)	122, 269, 272
Tsp45I	GTSAC	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	191
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.