RchiOBHm_Chr5g0044271

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001791
Physical Location & Seq
Forward (+)
39592171 .. 39592435
265 bp
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UTR
Exon/CDS
Intron
PRQ32248

Sequence Viewer

Length: 165 bp
ATGGGAAAAGGAACTAGTAGCTTTGGCAAGCGCTGCAACAAGACCCACACTCTCTGTTTCCGATGCGGACGACCGAGCTTCCGTCTCCAGAAGTCTCGCTGCTCCGCCTATGTTTACCCCGCTGCTCACCTCAGAAATTCTTCAAATGGGTTTAGGTTTCGTTGA

Protein Analysis

54

Amino Acids

6.18

Weight (kDa)

11.29

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37e PF01907 2 - 46 9.5e-18 Ribosomal protein L37e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 66, 105, 120
AcsI RAATTY 1 cut(s) 136
AfeI AGCGCT 1 cut(s) 32
AgsI TTSAA 1 cut(s) 144
AhlI ACTAGT 1 cut(s) 14
AluBI AGCT 2 cut(s) 21, 78
AluI AGCT 2 cut(s) 21, 78
Alw26I GTCTC 2 cut(s) 89, 99
Aor51HI AGCGCT 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 33, 99, 122
ApoI RAATTY 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 119
BbvI GCAGC 3 cut(s) 20, 86, 109
BcoDI GTCTC 2 cut(s) 89, 99
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 34
BisI GCNGC 3 cut(s) 34, 100, 123
BlsI GCNGC 3 cut(s) 35, 101, 124
BmsI GCATC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 145
BseXI GCAGC 3 cut(s) 20, 86, 109
Bsh1285I CGRYCG 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 89, 99
BsmBI CGTCTC 1 cut(s) 89
BspACI CCGC 3 cut(s) 66, 105, 120
BspCNI CTCAG 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstMAI GTCTC 2 cut(s) 89, 99
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 20, 86, 109
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 33
CviJI RGCY 2 cut(s) 21, 78
CviKI_1 RGCY 2 cut(s) 21, 78
DdeI CTNAG 1 cut(s) 131
EciI GGCGGA 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 89
FaiI YATR 1 cut(s) 111
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 34, 100, 123
Fsp4HI GCNGC 3 cut(s) 34, 100, 123
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 32
GluI GCNGC 3 cut(s) 34, 100, 123
GsuI CTGGAG 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 34
HhaI GCGC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 62, 134
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 131
HspAI GCGC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 1 cut(s) 101
Lsp1109I GCAGC 3 cut(s) 20, 86, 109
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 15
MboII GAAGA 1 cut(s) 132
MluCI AATT 1 cut(s) 136
MnlI CCTC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 35, 101, 124
SatI GCNGC 3 cut(s) 34, 100, 123
SetI ASST 4 cut(s) 23, 80, 132, 158
SfaNI GCATC 1 cut(s) 53
SgeI CNNG 7 cut(s) 27, 40, 52, 87, 100, 108, 131
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 66, 105, 120
SspMI CTAG 1 cut(s) 15
TaqII GACCGA 1 cut(s) 88
TasI AATT 1 cut(s) 136
TseI GCWGC 3 cut(s) 33, 99, 122
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.