Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

49383661 .. 49384455

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCTCAGAGAGAGGAGCGCATTGAGCTTAAGTTCAGGATTTATGATGGAACAGATATTGGGCACAGTTCTTATGCGCCTTCCATGACTGTAGCTACTCTTAAGAAAAGGCTACTTTCTGAGTGGCCTCAAGCCAAAACAGTGACACCCAAGACAGTGAATGAAGTGAAACTGATACATGGTGGGAGAGTTTTAGAGAATAGTAAGACACTTGCTGATTCCAAAATAATGTCCTTTGGTAACTTACCTGGTGGTGTTATAACCATGCATGTGGTAGTTCAGCCTACTGTTGCTAAAGAGAAGAAAGCTAAAAACCAGAAGGATATGCAAAAGATGAATTCATGCTCGTGTACCATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

9.7

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD_2	PF13881	6 - 118	8.7e-38	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	352
AflII	CTTAAG	2 cut(s)	29, 101
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	28, 95, 308
AluI	AGCT	3 cut(s)	28, 95, 308
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	21, 79
BaeGI	GKGCMC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	346
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	90
BfrI	CTTAAG	2 cut(s)	29, 101
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	20, 111
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	19, 112
BspTI	CTTAAG	2 cut(s)	29, 101
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	5 cut(s)	68, 91, 142, 157, 289
BstAFI	CTTAAG	2 cut(s)	29, 101
BstDEI	CTNAG	2 cut(s)	6, 120
BstHHI	GCGC	2 cut(s)	21, 79
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	147, 162
CfoI	GCGC	2 cut(s)	21, 79
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	5 cut(s)	85, 179, 265, 269, 342
CviJI	RGCY	7 cut(s)	28, 95, 112, 127, 134, 283, 308
CviKI_1	RGCY	7 cut(s)	28, 95, 112, 127, 134, 283, 308
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	6, 120
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	5 cut(s)	88, 182, 268, 272, 345
FaiI	YATR	9 cut(s)	45, 75, 86, 180, 260, 266, 270, 326, 343
FatI	CATG	5 cut(s)	84, 178, 264, 268, 341
GlaI	GCGC	2 cut(s)	20, 78
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	21, 79
Hin1II	CATG	5 cut(s)	88, 182, 268, 272, 345
Hin6I	GCGC	2 cut(s)	19, 77
HinP1I	GCGC	2 cut(s)	19, 77
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	2 cut(s)	9, 121
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	90, 313
HpyCH4III	ACNGT	5 cut(s)	68, 91, 142, 157, 289
HpyCH4V	TGCA	2 cut(s)	268, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	6, 120
Hsp92II	CATG	5 cut(s)	88, 182, 268, 272, 345
HspAI	GCGC	2 cut(s)	19, 77
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	22, 234, 261, 329
MabI	ACCWGGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	142, 239
MboII	GAAGA	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	2 cut(s)	7, 138
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	3 cut(s)	30, 102, 361
MslI	CAYNNNNRTG	2 cut(s)	269, 346
MspCI	CTTAAG	2 cut(s)	29, 101
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	88, 182, 268, 272, 345
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	269, 346
SaqAI	TTAA	3 cut(s)	30, 102, 361
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	4 cut(s)	30, 97, 250, 310
SexAI	ACCWGGT	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	269, 346
SmlI	CTYRAG	3 cut(s)	29, 101, 129
SmoI	CTYRAG	3 cut(s)	29, 101, 129
Sse9I	AATT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	5 cut(s)	68, 91, 142, 157, 289
TasI	AATT	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	30, 102, 361
Tru9I	TTAA	3 cut(s)	30, 102, 361
TscAI	CASTG	2 cut(s)	147, 162
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	177, 330, 350
TspRI	CASTG	2 cut(s)	147, 162
Vha464I	CTTAAG	2 cut(s)	29, 101
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.