Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

4189923 .. 4190456

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGCGGTGCGGCCGTCGGAGCTTTCATCTTCAGAAGAGTCGTTGCGCCTCTTGTGGCTACCCCGCCAGCCGTATCAGAAAACATAACTGGAGCGTGAAGGCGATTCGCAGAAAGACTACAGGTACTGGTAGAATGAGGTGCCTTCGTCAGTCATGTCGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

54

Amino Acids

6.3

Weight (kDa)

11.86

Isoelectric Point (pI)

80.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 34	2.1e-16	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	159
AciI	CCGC	4 cut(s)	4, 9, 63, 159
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	124
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	92, 130
BseNI	ACTGG	2 cut(s)	92, 130
BseX3I	CGGCCG	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	13
BsnI	GGCC	1 cut(s)	12
BspACI	CCGC	4 cut(s)	4, 9, 63, 159
BspANI	GGCC	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	92, 130
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	47
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	159
BstZI	CGGCCG	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	12, 21, 57, 69
CviKI_1	RGCY	4 cut(s)	12, 21, 57, 69
CviQI	GTAC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	10
EagI	CGGCCG	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	14
FaeI	CATG	1 cut(s)	156
FaiI	YATR	2 cut(s)	84, 154
FatI	CATG	1 cut(s)	152
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	37, 103
Hpy188I	TCNGA	3 cut(s)	18, 33, 77
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	91, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	18, 90
LpnPI	CCDG	4 cut(s)	73, 79, 105, 111
MboII	GAAGA	2 cut(s)	20, 46
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	58, 129
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	46
SetI	ASST	3 cut(s)	23, 124, 140
SfcI	CTRYAG	1 cut(s)	117
SgeI	CNNG	7 cut(s)	63, 74, 78, 100, 106, 132, 138
SsiI	CCGC	4 cut(s)	4, 9, 63, 159
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.