Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

53495565 .. 53497343

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAGCTCACTTACAATTATGGAGTTACTTCCTATGATATTGGGATTGGGTTTGTCAACTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACCGGAAGGATGAGGTATCTGCGCAATGTCCCACGCAGGTTCAAGAGCGGTTTCAGAGAAGGTACCGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

11.0

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	4 cut(s)	7, 167, 188, 194
AluI	AGCT	4 cut(s)	7, 167, 188, 194
Alw21I	GWGCWC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	167, 188, 191
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	154, 175
BccI	CCATC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	3 cut(s)	168, 189, 192
BlsI	GCNGC	3 cut(s)	169, 190, 193
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	97, 160
BmrFI	CCNGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	154, 175
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	93, 99
BslFI	GGGAC	2 cut(s)	109, 110
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	109, 110
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	97, 160
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	154, 175
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	159
CviJI	RGCY	5 cut(s)	7, 74, 167, 188, 194
CviKI_1	RGCY	5 cut(s)	7, 74, 167, 188, 194
CviQI	GTAC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	173
FaiI	YATR	2 cut(s)	21, 36
FaqI	GGGAC	2 cut(s)	109, 110
Fnu4HI	GCNGC	3 cut(s)	168, 189, 192
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	168, 189, 192
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	3 cut(s)	168, 189, 192
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	93, 99
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	93, 99
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	79, 139
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	64, 96, 149, 175
HpyCH4V	TGCA	2 cut(s)	170, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HspAI	GCGC	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	4, 185
LpnPI	CCDG	5 cut(s)	46, 64, 106, 112, 118
Lsp1109I	GCAGC	2 cut(s)	154, 175
MaeIII	GTNAC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	97, 190
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	16
MnlI	CCTC	2 cut(s)	75, 102
MseI	TTAA	1 cut(s)	202
MspI	CCGG	2 cut(s)	93, 99
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	97, 160
NsbI	TGCGCA	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	169, 190, 193
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	97, 160
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	3 cut(s)	168, 189, 192
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	9, 113, 137, 160, 169, 190, 196
SfcI	CTRYAG	1 cut(s)	189
SgeI	CNNG	9 cut(s)	73, 91, 105, 106, 111, 141, 145, 151, 186
SinI	GGWCC	1 cut(s)	96
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	173
TasI	AATT	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
TseI	GCWGC	3 cut(s)	167, 188, 191
VpaK11BI	GGWCC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.