Rorug02G0150500

Ribosomal protein L37e

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
13285035 .. 13287135
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0150500.1

Sequence Viewer

Length: 1488 bp
ATGGCGAATGGAGGAAAAGATCATTCTGTCATTATGATTGGAGCAGGGAAAACAGAGTGGCAACTTCACCCATCAGCTGGAAACGAGGCTTGTTGCATCTTCAGAGTTCCCCAATGCCTTGCGGAAATACACCCCAAGACCTACCAGCCTCACGTAGTCTCCATCGGCCCTTACCACTATGGAAAACCACATCTGCAGATGATGCAGGAGCACAAACAGAGATATCTTGGCGATCTGCTTGCTCGAACAGCATCAACTGGCCCGAAACTTGATGAGTACCTGCAGGCTGTTGAATCAAGGGAAAAAGATATAAGAGATTGCTATTCGGAGAACATCAAGTTTGGCAGCGGCGATCTAGTTGAGATAATGGTGCTAGACGGTCTCTTCATTATCGAACTCTTCTGCAAAGAATTCAAAGGACTAGTATCACAACCACAGAGTCATGGTGACGATCCGATTTTTAACTTGGCATGGGTGAAGCCTAATCTCATACGAGATCTCCTCCGGTTGGAGAACCAAATTCCTTTCTTTGTTCTTCAAATCTTGTTTGATAAATCAAAAGCTTTGAGAAACGATAGTCAATTGTCTCTTTCCAAGCTCGCTTTGCAATTCATCAGTTACGCAGTAGAAAGACTGGAAAAGGTCTTAAACCAGCAATTTGAAGCCAAAAATTTGCTTGATTTAGTGCGATTGAGTTTTGCACCTCAACCTCTTGATCATCCATCTCATCCACCTCCAGACAAGAAGCTGAAAAACACTCCTTCCTTACTCCTATCAATCTCACCTGCAAGAACACCTCTGAAAGGCATCAAGTCGAACGCATGGGAGGCGGTGAAAAAGTTACTGGCAGGAATTAAATGGAAGACACAGAAGGCAGACACTGTCCAATCAGAAGAAACACCTCTCGAAGGCGAGTCAGTTCAATTGATTAAATCAGCAAGAAAGCTCTATAAGTCTGGAATTAAGTTCAAGACCGTGGCGGGAAGGAGCTCCTTGGACATCAAATTTCGCAATGGAGTACTCAAAATCCCAAACATATTACTAGATGATCTTCGTGCCGATTTATTTCTAAATTTTGTTGCATTTGAACAGCACCGATACTTCCTTTGCCCATCAAGGCACATAACCAGTTATGCAGCATTCATGAGTTGCCTCATCCGCACACCTGAGGACGCAACATTTCTCCGCGATAAAGACATTATTGACAACTATCTTGGAACCGACGAGGAAGTTGCCAATTTCTTTAGAACCTTAGGTAAAGATGTGACTTTTGATATTGATGAGAGCTATCTATGCAAGTTGTTCAAAGATGTGAACAAGTACCAGAGAAATGTTTTGCACGTGACATGGGGAGAGTTCAAATTCAAGTACTTTGATTCCCCCTGGTCTTTCGTATCTGCTTTAGCTGCTGTCATAGTTCTACTGCTTACCGTACTTCAGACCTTCTATACTGTTTATGAGTATTCCCATCCACAACAGTCTGGCTGA

Protein Analysis

495

Amino Acids

56.45

Weight (kDa)

8.41

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 33 - 476 6.6e-116 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 793
Acc36I ACCTGC 2 cut(s) 288, 793
AccB7I CCANNNNNTGG 1 cut(s) 77
AccII CGCG 1 cut(s) 1188
AciI CCGC 6 cut(s) 122, 348, 830, 980, 1159, 1186
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 6 cut(s) 410, 519, 670, 1004, 1072, 1361
AcuI CTGAAG 2 cut(s) 85, 1421
AcvI CACGTG 1 cut(s) 1342
AfaI GTAC 5 cut(s) 278, 1020, 1322, 1370, 1434
AfiI CCNNNNNNNGG 4 cut(s) 77, 508, 803, 908
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 1382
AluBI AGCT 8 cut(s) 77, 563, 598, 748, 946, 990, 1287, 1406
AluI AGCT 8 cut(s) 77, 563, 598, 748, 946, 990, 1287, 1406
Alw21I GWGCWC 2 cut(s) 213, 992
Alw26I GTCTC 3 cut(s) 163, 386, 591
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 881
AoxI GGCC 2 cut(s) 166, 259
ApeKI GCWGC 3 cut(s) 345, 1136, 1406
ApoI RAATTY 6 cut(s) 410, 519, 670, 1004, 1072, 1361
AspS9I GGNCC 2 cut(s) 167, 260
AsuHPI GGTGA 5 cut(s) 59, 458, 487, 774, 844
AxyI CCTNAGG 2 cut(s) 1167, 1252
BanII GRGCYC 1 cut(s) 992
BbrPI CACGTG 1 cut(s) 1342
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 2 cut(s) 213, 992
BbvI GCAGC 3 cut(s) 357, 1148, 1393
BccI CCATC 5 cut(s) 79, 170, 730, 1120, 1476
BcgI CGANNNNNNTGC 4 cut(s) 221, 255, 1214, 1248
BciT130I CCWGG 1 cut(s) 1384
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 3 cut(s) 163, 386, 591
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 4 cut(s) 356, 374, 422, 1043
BfmI CTRYAG 2 cut(s) 194, 281
BfuAI ACCTGC 2 cut(s) 288, 793
BglII AGATCT 1 cut(s) 496
BisI GCNGC 4 cut(s) 346, 349, 1137, 1407
BlsI GCNGC 4 cut(s) 347, 350, 1138, 1408
BmcAI AGTACT 2 cut(s) 1020, 1370
Bme1390I CCNGG 1 cut(s) 1384
BmgT120I GGNCC 2 cut(s) 167, 260
BmiI GGNNCC 1 cut(s) 1219
BmrFI CCNGG 1 cut(s) 1384
BmsI GCATC 4 cut(s) 105, 192, 260, 816
BpiI GAAGAC 1 cut(s) 869
BplI GAGNNNNNCTC 2 cut(s) 486, 518
BpmI CTGGAG 1 cut(s) 720
BsaAI YACGTR 2 cut(s) 154, 1342
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 975, 993, 1382
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 483, 513
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 508, 803, 908
Bse1I ACTGG 4 cut(s) 262, 639, 849, 1128
Bse21I CCTNAGG 2 cut(s) 1167, 1252
Bse3DI GCAATG 1 cut(s) 1018
BseBI CCWGG 1 cut(s) 1384
BseDI CCNNGG 3 cut(s) 975, 993, 1382
BseGI GGATG 4 cut(s) 718, 727, 1155, 1468
BseLI CCNNNNNNNGG 4 cut(s) 77, 508, 803, 908
BseMI GCAATG 1 cut(s) 1018
BseMII CTCAG 1 cut(s) 1158
BseNI ACTGG 4 cut(s) 262, 639, 849, 1128
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 3 cut(s) 357, 1148, 1393
Bsh1236I CGCG 1 cut(s) 1188
BshFI GGCC 2 cut(s) 168, 261
BsiHKAI GWGCWC 2 cut(s) 213, 992
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 4 cut(s) 77, 508, 803, 908
BsmAI GTCTC 3 cut(s) 163, 386, 591
BsmI GAATGC 1 cut(s) 1139
BsnI GGCC 2 cut(s) 168, 261
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 213, 992
Bsp143I GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
BspACI CCGC 6 cut(s) 122, 348, 830, 980, 1159, 1186
BspANI GGCC 2 cut(s) 168, 261
BspCNI CTCAG 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 1188
BspHI TCATGA 1 cut(s) 1143
BspLI GGNNCC 1 cut(s) 1219
BspMAI CTGCAG 2 cut(s) 198, 285
BspMI ACCTGC 2 cut(s) 288, 793
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1018
BsrI ACTGG 4 cut(s) 262, 639, 849, 1128
BssECI CCNNGG 3 cut(s) 975, 993, 1382
BssMI GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 1384
Bst4CI ACNGT 6 cut(s) 380, 883, 976, 1432, 1453, 1479
Bst6I CTCTTC 2 cut(s) 389, 404
BstAPI GCANNNNNTGC 1 cut(s) 202
BstBAI YACGTR 2 cut(s) 154, 1342
BstC8I GCNNGC 3 cut(s) 240, 285, 600
BstDEI CTNAG 2 cut(s) 1167, 1252
BstDSI CCRYGG 1 cut(s) 975
BstENI CCTNNNNNAGG 2 cut(s) 801, 906
BstF5I GGATG 4 cut(s) 718, 727, 1155, 1468
BstFNI CGCG 1 cut(s) 1188
BstKTI GATC 7 cut(s) 22, 235, 355, 454, 499, 718, 1051
BstMAI GTCTC 3 cut(s) 163, 386, 591
BstMBI GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
BstMWI GCNNNNNNNGC 7 cut(s) 202, 248, 604, 827, 1158, 1293, 1406
BstNI CCWGG 1 cut(s) 1384
BstSCI CCNGG 1 cut(s) 1382
BstSFI CTRYAG 2 cut(s) 194, 281
BstUI CGCG 1 cut(s) 1188
BstV1I GCAGC 3 cut(s) 357, 1148, 1393
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
Bsu36I CCTNAGG 2 cut(s) 1167, 1252
BsuRI GGCC 2 cut(s) 168, 261
BtgI CCRYGG 1 cut(s) 975
BtsCI GGATG 4 cut(s) 718, 727, 1155, 1468
BtsIMutI CAGTG 1 cut(s) 879
BveI ACCTGC 2 cut(s) 288, 793
Cac8I GCNNGC 3 cut(s) 240, 285, 600
CaiI CAGNNNCTG 1 cut(s) 881
CciI TCATGA 1 cut(s) 1143
Cfr13I GGNCC 2 cut(s) 167, 260
CseI GACGC 1 cut(s) 1181
Csp6I GTAC 5 cut(s) 277, 1019, 1321, 1369, 1433
CviAII CATG 5 cut(s) 443, 471, 822, 1144, 1347
CviQI GTAC 5 cut(s) 277, 1019, 1321, 1369, 1433
DdeI CTNAG 2 cut(s) 1167, 1252
DpnI GATC 7 cut(s) 21, 234, 354, 453, 498, 717, 1050
DpnII GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
Eam1104I CTCTTC 2 cut(s) 389, 404
EarI CTCTTC 2 cut(s) 389, 404
Ecl136II GAGCTC 1 cut(s) 990
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 992
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 990
Eco57I CTGAAG 2 cut(s) 85, 1421
Eco72I CACGTG 1 cut(s) 1342
Eco81I CCTNAGG 2 cut(s) 1167, 1252
EcoICRI GAGCTC 1 cut(s) 990
EcoNI CCTNNNNNAGG 2 cut(s) 801, 906
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 1382
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 992
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 5 cut(s) 446, 474, 825, 1147, 1350
FatI CATG 5 cut(s) 442, 470, 821, 1143, 1346
FauI CCCGC 1 cut(s) 973
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 346, 349, 1137, 1407
FokI GGATG 4 cut(s) 705, 714, 1142, 1455
FriOI GRGCYC 1 cut(s) 992
Fsp4HI GCNGC 4 cut(s) 346, 349, 1137, 1407
FspBI CTAG 4 cut(s) 356, 374, 422, 1043
GluI GCNGC 4 cut(s) 346, 349, 1137, 1407
GsuI CTGGAG 1 cut(s) 720
HaeIII GGCC 2 cut(s) 168, 261
HapII CCGG 1 cut(s) 505
HgaI GACGC 1 cut(s) 1181
Hin1II CATG 5 cut(s) 446, 474, 825, 1147, 1350
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 4 cut(s) 293, 439, 914, 1376
HpaII CCGG 1 cut(s) 505
HphI GGTGA 5 cut(s) 59, 458, 487, 774, 844
Hpy166II GTNNAC 1 cut(s) 1315
Hpy188I TCNGA 6 cut(s) 104, 328, 456, 801, 892, 1440
Hpy188III TCNNGA 6 cut(s) 713, 737, 905, 957, 970, 1144
Hpy8I GTNNAC 1 cut(s) 1315
Hpy99I CGWCG 1 cut(s) 1226
HpyAV CCTTC 5 cut(s) 771, 865, 902, 978, 1453
HpyCH4III ACNGT 6 cut(s) 380, 883, 976, 1432, 1453, 1479
HpyCH4IV ACGT 2 cut(s) 153, 1341
HpyF10VI GCNNNNNNNGC 7 cut(s) 202, 248, 604, 827, 1158, 1293, 1406
HpyF3I CTNAG 2 cut(s) 1167, 1252
HpySE526I ACGT 2 cut(s) 153, 1341
Hsp92II CATG 5 cut(s) 446, 474, 825, 1147, 1350
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
LmnI GCTCC 4 cut(s) 41, 208, 987, 995
Lsp1109I GCAGC 3 cut(s) 357, 1148, 1393
LweI GCATC 4 cut(s) 105, 192, 260, 816
MaeI CTAG 4 cut(s) 356, 374, 422, 1043
MaeII ACGT 2 cut(s) 153, 1341
MaeIII GTNAC 5 cut(s) 446, 617, 840, 1264, 1342
MalI GATC 7 cut(s) 21, 234, 354, 453, 498, 717, 1050
MboI GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
MboII GAAGA 7 cut(s) 91, 376, 391, 527, 874, 905, 1043
MfeI CAATTG 2 cut(s) 581, 923
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 213, 992
MlyI GAGTC 2 cut(s) 448, 923
MmeI TCCRAC 1 cut(s) 489
MseI TTAA 5 cut(s) 462, 647, 855, 930, 963
MspA1I CMGCKG 2 cut(s) 77, 348
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 1 cut(s) 1384
MunI CAATTG 2 cut(s) 581, 923
Mva1269I GAATGC 1 cut(s) 1139
MvaI CCWGG 1 cut(s) 1384
MvnI CGCG 1 cut(s) 1188
MwoI GCNNNNNNNGC 7 cut(s) 202, 248, 604, 827, 1158, 1293, 1406
NdeII GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
NlaIII CATG 5 cut(s) 446, 474, 825, 1147, 1350
NlaIV GGNNCC 1 cut(s) 1219
NmuCI GTSAC 3 cut(s) 446, 1264, 1342
PagI TCATGA 1 cut(s) 1143
PaqCI CACCTGC 1 cut(s) 793
PctI GAATGC 1 cut(s) 1139
PfeI GAWTC 2 cut(s) 293, 1376
PflFI GACNNNGTC 1 cut(s) 881
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 347, 350, 1138, 1408
PleI GAGTC 2 cut(s) 447, 922
PmaCI CACGTG 1 cut(s) 1342
PmlI CACGTG 1 cut(s) 1342
PpsI GAGTC 2 cut(s) 447, 922
Ppu21I YACGTR 2 cut(s) 154, 1342
Psp124BI GAGCTC 1 cut(s) 992
Psp6I CCWGG 1 cut(s) 1382
PspCI CACGTG 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 1382
PspN4I GGNNCC 1 cut(s) 1219
PspPI GGNCC 2 cut(s) 167, 260
PstI CTGCAG 2 cut(s) 198, 285
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 5 cut(s) 278, 1020, 1322, 1370, 1434
RsaNI GTAC 5 cut(s) 277, 1019, 1321, 1369, 1433
SacI GAGCTC 1 cut(s) 992
SaqAI TTAA 5 cut(s) 462, 647, 855, 930, 963
SatI GCNGC 4 cut(s) 346, 349, 1137, 1407
Sau3AI GATC 7 cut(s) 19, 232, 352, 451, 496, 715, 1048
Sau96I GGNCC 2 cut(s) 167, 260
SbfI CCTGCAGG 1 cut(s) 285
ScaI AGTACT 2 cut(s) 1020, 1370
SchI GAGTC 2 cut(s) 448, 923
ScrFI CCNGG 1 cut(s) 1384
SdaI CCTGCAGG 1 cut(s) 285
SduI GDGCHC 2 cut(s) 213, 992
SfaNI GCATC 4 cut(s) 105, 192, 260, 816
SfcI CTRYAG 2 cut(s) 194, 281
SpeI ACTAGT 1 cut(s) 421
Sse8387I CCTGCAGG 1 cut(s) 285
SsiI CCGC 6 cut(s) 122, 348, 830, 980, 1159, 1186
SspMI CTAG 4 cut(s) 356, 374, 422, 1043
SstI GAGCTC 1 cut(s) 992
StyD4I CCNGG 1 cut(s) 1382
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 6 cut(s) 380, 883, 976, 1432, 1453, 1479
TaiI ACGT 2 cut(s) 156, 1344
TaqI TCGA 4 cut(s) 244, 393, 815, 906
TatI WGTACW 2 cut(s) 1018, 1368
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 2 cut(s) 293, 1376
Tru1I TTAA 5 cut(s) 462, 647, 855, 930, 963
Tru9I TTAA 5 cut(s) 462, 647, 855, 930, 963
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 3 cut(s) 446, 1264, 1342
TseI GCWGC 3 cut(s) 345, 1136, 1406
Tsp45I GTSAC 3 cut(s) 446, 1264, 1342
TspDTI ATGAA 3 cut(s) 376, 601, 1132
TspRI CASTG 1 cut(s) 886
Tth111I GACNNNGTC 1 cut(s) 881
Van91I CCANNNNNTGG 1 cut(s) 77
XagI CCTNNNNNAGG 2 cut(s) 801, 906
XapI RAATTY 6 cut(s) 410, 519, 670, 1004, 1072, 1361
XspI CTAG 4 cut(s) 356, 374, 422, 1043
ZrmI AGTACT 2 cut(s) 1020, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.