Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

4990805 .. 4992109

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGAAGGGAACAGGGAGTTTTGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTGAGGTGTGGACGTCGCAGCTTCCACTTGCAGAAGAGTCGCTGCTCGGCTTGTGCCTTTCCTGCTGCTCGCAAGAGGAAGTACAACTGGAGTGTTAAAGCCATCCGAAGGAAGACCACTGGAACCGGAAGGATGAGGTATCTGCGCAATGTTCCTCGCAGATTCAAGAGTGGCTTCAGAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCAGCAGCAACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

96

Amino Acids

10.73

Weight (kDa)

11.96

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	73
Acc16I	TGCGCA	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	217, 267
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	140, 244
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	2 cut(s)	78, 251
AluI	AGCT	2 cut(s)	78, 251
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
AspLEI	GCGC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	5 cut(s)	86, 87, 109, 238, 284
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BisI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
BlsI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
BmiI	GGNNCC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	149, 181
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	159, 195
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	149, 181
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	5 cut(s)	86, 87, 109, 238, 284
BsgI	GTGCAG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	149, 181
BssECI	CCNNGG	1 cut(s)	257
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	159, 195
BstHHI	GCGC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 281
BstV1I	GCAGC	5 cut(s)	86, 87, 109, 238, 284
BstV2I	GAAGAC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	159, 195
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	139, 243
CviJI	RGCY	5 cut(s)	78, 107, 158, 231, 251
CviKI_1	RGCY	5 cut(s)	78, 107, 158, 231, 251
CviQI	GTAC	2 cut(s)	139, 243
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	217, 267
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
Fnu4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FokI	GGATG	2 cut(s)	146, 202
Fsp4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
GsuI	CTGGAG	1 cut(s)	166
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	94, 219
HpaII	CCGG	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	164, 236
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	159, 180, 233, 259
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	88, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 281
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	4 cut(s)	130, 132, 162, 196
Lsp1109I	GCAGC	5 cut(s)	86, 87, 109, 238, 284
MaeII	ACGT	1 cut(s)	70
MboII	GAAGA	3 cut(s)	103, 181, 274
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	24, 27, 54, 62, 126, 186, 222
MseI	TTAA	2 cut(s)	153, 286
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	119, 281
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	140, 244
RsaNI	GTAC	2 cut(s)	139, 243
SaqAI	TTAA	2 cut(s)	153, 286
SatI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
SchI	GAGTC	1 cut(s)	103
SetI	ASST	6 cut(s)	65, 73, 80, 197, 244, 253
StyI	CCWWGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	153, 286
Tru9I	TTAA	2 cut(s)	153, 286
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
TspRI	CASTG	1 cut(s)	181
ZraI	GACGTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.