Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

29253878 .. 29255218

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0288100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCATCCACGGCTCTCTCGTCTCCATTCATAGGCAAAGCCATTATTCCTTTAAACACAGAGACAGGGCTTTTAGCTGTCCAAGGCAATGGTAGGGTTTCTATGAGGAAGACAGCAAAGAAGCCAGCTGCTTCATCAGGCAGCCCCTGGTACGGCCCTGACCGTGTCAAGTACCTTGGACCATTCTCCGGTGAGGCTCCATCTTACCTAACCGGCGAGTTCCCTGGTGACTACGGGTGGGACACCGCAGGGCTATCAGCCGACCCAGAAACTTTTGCCAAGAACCGTGAACTCGAGGTTATTCACTCCAGATGGGCAATGCTTGGGGCTCTGGGCTGTGTTTTCCCTGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTGTGGTTCAAAGCTGGAGCTCAGATCTTCAGCGAGGGTGGCCTGGACTACCTTGGAAACCCAAGCTTAGTTCATGCACAGAGCATCTTAGCAATATGGGCAACCCAGGTTCTTCTCATGGGAGCTGTTGAGGGTTACCGCATTGCTGGAGGGCCACTTGGAGAAATCACCGACCCATTGTACCCAGGAGGCAGCTTTGATCCTTTGGGGCTTGCAGATGACCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAGCTTAAGAATGGAAGACTTGCCATGTTCTCCATGTTTGGCTTCTTTGTGCAGGCCATTGTAACCGGAAAGGGCCCTATTGAGAACCTTGCTGACCATCTGGCTGACCCTGTTAGCAACAATGCCTGGTCGTATGCCACCAACTTTGTACCTGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

266

Amino Acids

28.26

Weight (kDa)

5.29

Isoelectric Point (pI)

21.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 233	1.4e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	246, 526
AclWI	GGATC	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	4 cut(s)	152, 173, 569, 789
AfiI	CCNNNNNNNGG	3 cut(s)	32, 152, 188
AflII	CTTAAG	2 cut(s)	629, 644
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	27, 56
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	5 cut(s)	154, 427, 539, 693, 712
ApaI	GGGCCC	1 cut(s)	716
ApeKI	GCWGC	3 cut(s)	128, 141, 579
AspS9I	GGNCC	5 cut(s)	155, 179, 539, 712, 713
AsuHPI	GGTGA	5 cut(s)	203, 239, 392, 547, 646
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	716
BanII	GRGCYC	3 cut(s)	331, 409, 716
BbsI	GAAGAC	2 cut(s)	116, 661
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	115, 153, 591
BccI	CCATC	3 cut(s)	208, 306, 744
BceAI	ACGGC	2 cut(s)	27, 169
BciT130I	CCWGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
BcoDI	GTCTC	2 cut(s)	27, 56
BfrI	CTTAAG	2 cut(s)	629, 644
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	3 cut(s)	129, 142, 580
BlsI	GCNGC	3 cut(s)	130, 143, 581
Bme1390I	CCNGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	5 cut(s)	155, 179, 539, 712, 713
BmiI	GGNNCC	2 cut(s)	198, 714
BmrFI	CCNGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
BmsI	GCATC	2 cut(s)	14, 480
BpiI	GAAGAC	2 cut(s)	116, 661
BpmI	CTGGAG	3 cut(s)	292, 423, 555
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	8 cut(s)	9, 82, 146, 175, 223, 439, 492, 571
BsaWI	WCCGGW	2 cut(s)	188, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 152, 188
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	3 cut(s)	94, 324, 528
BseBI	CCWGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
BseDI	CCNNGG	8 cut(s)	9, 82, 146, 175, 223, 439, 492, 571
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	3 cut(s)	32, 152, 188
BseMI	GCAATG	3 cut(s)	94, 324, 528
BseMII	CTCAG	2 cut(s)	339, 422
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	3 cut(s)	115, 153, 591
BsgI	GTGCAG	1 cut(s)	710
BshFI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	189, 213, 705
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	32, 152, 188
BsmAI	GTCTC	2 cut(s)	27, 56
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	712
Bsp1286I	GDGCHC	3 cut(s)	331, 409, 716
Bsp143I	GATC	2 cut(s)	411, 586
BspACI	CCGC	2 cut(s)	246, 526
BspANI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BspCNI	CTCAG	2 cut(s)	340, 421
BspLI	GGNNCC	2 cut(s)	198, 714
BspPI	GGATC	1 cut(s)	581
BspTI	CTTAAG	2 cut(s)	629, 644
BsrDI	GCAATG	3 cut(s)	94, 324, 528
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	8 cut(s)	9, 82, 146, 175, 223, 439, 492, 571
BssMI	GATC	2 cut(s)	411, 586
BssT1I	CCWWGG	3 cut(s)	82, 175, 439
Bst2UI	CCWGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
Bst4CI	ACNGT	2 cut(s)	164, 287
BstAFI	CTTAAG	2 cut(s)	629, 644
BstC8I	GCNNGC	3 cut(s)	126, 600, 693
BstDEI	CTNAG	4 cut(s)	348, 408, 454, 475
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	414, 589
BstMAI	GTCTC	2 cut(s)	27, 56
BstMBI	GATC	2 cut(s)	411, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
BstNI	CCWGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
BstSLI	GKGCMC	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	115, 153, 591
BstV2I	GAAGAC	2 cut(s)	116, 661
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	3 cut(s)	126, 600, 693
CaiI	CAGNNNCTG	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	5 cut(s)	155, 179, 539, 712, 713
Csp6I	GTAC	4 cut(s)	151, 172, 568, 788
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	4 cut(s)	461, 505, 664, 673
CviQI	GTAC	4 cut(s)	151, 172, 568, 788
DdeI	CTNAG	4 cut(s)	348, 408, 454, 475
DpnI	GATC	2 cut(s)	413, 588
DpnII	GATC	2 cut(s)	411, 586
DraI	TTTAAA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	3 cut(s)	82, 175, 439
Eco24I	GRGCYC	3 cut(s)	331, 409, 716
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	407
EcoO109I	RGGNCCY	2 cut(s)	712, 713
EcoO65I	GGTNACC	1 cut(s)	521
EcoRII	CCWGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
EcoT14I	CCWWGG	3 cut(s)	82, 175, 439
EcoT38I	GRGCYC	3 cut(s)	331, 409, 716
ErhI	CCWWGG	3 cut(s)	82, 175, 439
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	4 cut(s)	464, 508, 667, 676
FaiI	YATR	8 cut(s)	32, 104, 462, 484, 506, 665, 674, 774
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	460, 504, 663, 672
Fnu4HI	GCNGC	3 cut(s)	129, 142, 580
FriOI	GRGCYC	3 cut(s)	331, 409, 716
Fsp4HI	GCNGC	3 cut(s)	129, 142, 580
GluI	GCNGC	3 cut(s)	129, 142, 580
GsuI	CTGGAG	3 cut(s)	292, 423, 555
HaeIII	GGCC	5 cut(s)	156, 429, 541, 695, 714
HapII	CCGG	3 cut(s)	189, 213, 705
Hin1II	CATG	4 cut(s)	464, 508, 667, 676
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	3 cut(s)	189, 213, 705
HphI	GGTGA	5 cut(s)	203, 239, 392, 547, 646
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	309, 360
Hpy8I	GTNNAC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	164, 287
HpyCH4V	TGCA	4 cut(s)	464, 602, 623, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
HpyF3I	CTNAG	4 cut(s)	348, 408, 454, 475
Hsp92II	CATG	4 cut(s)	464, 508, 667, 676
Kzo9I	GATC	2 cut(s)	411, 586
LmnI	GCTCC	3 cut(s)	202, 404, 509
Lsp1109I	GCAGC	3 cut(s)	115, 153, 591
LweI	GCATC	2 cut(s)	14, 480
MaeIII	GTNAC	3 cut(s)	227, 521, 700
MalI	GATC	2 cut(s)	413, 588
MboI	GATC	2 cut(s)	411, 586
MboII	GAAGA	4 cut(s)	121, 406, 491, 666
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	331, 409, 716
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	99, 187, 289, 415, 511, 530, 569, 607
MseI	TTAA	3 cut(s)	53, 630, 645
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	2 cut(s)	629, 644
MspI	CCGG	3 cut(s)	189, 213, 705
MspR9I	CCNGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
MvaI	CCWGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
MwoI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
NdeII	GATC	2 cut(s)	411, 586
NlaIII	CATG	4 cut(s)	464, 508, 667, 676
NlaIV	GGNNCC	2 cut(s)	198, 714
NmuCI	GTSAC	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	130, 143, 581
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
PspEI	GGTNACC	1 cut(s)	521
PspGI	CCWGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
PspN4I	GGNNCC	2 cut(s)	198, 714
PspOMI	GGGCCC	1 cut(s)	712
PspPI	GGNCC	5 cut(s)	155, 179, 539, 712, 713
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	4 cut(s)	152, 173, 569, 789
RsaNI	GTAC	4 cut(s)	151, 172, 568, 788
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	53, 630, 645
SatI	GCNGC	3 cut(s)	129, 142, 580
Sau3AI	GATC	2 cut(s)	411, 586
Sau96I	GGNCC	5 cut(s)	155, 179, 539, 712, 713
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	7 cut(s)	148, 225, 431, 494, 573, 766, 792
SduI	GDGCHC	3 cut(s)	331, 409, 716
SfaNI	GCATC	2 cut(s)	14, 480
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	293, 629, 644
SmoI	CTYRAG	3 cut(s)	293, 629, 644
SsiI	CCGC	2 cut(s)	246, 526
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	7 cut(s)	146, 223, 429, 492, 571, 764, 790
StyI	CCWWGG	3 cut(s)	82, 175, 439
TaaI	ACNGT	2 cut(s)	164, 287
TaqI	TCGA	1 cut(s)	294
Tru1I	TTAA	3 cut(s)	53, 630, 645
Tru9I	TTAA	3 cut(s)	53, 630, 645
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	128, 141, 579
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	19, 123, 449
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	164
Vha464I	CTTAAG	2 cut(s)	629, 644
VpaK11BI	GGWCC	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.