Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

20548844 .. 20550549

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1210700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGAAGGGAACTGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTCCGGTGTGGCCGCCGCAGCTTCCATCTACAGAAGAGTAGGTGCTCTGCTTGTGCTTTCCCTGCTGCCCGCAAGAGGAAGTACAATTGGAGTGAAAAGGCGATCCGAAGGAAGACCACTGGAACTGGAAGGATGAGGTATCTGCGCAATGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAAGGTACCGAAGCTGCACCACGTAAGAAGGGAGCAGCCGCAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

11.86

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	3.4e-27	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	5 cut(s)	70, 73, 127, 228, 276
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	140, 244
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	2 cut(s)	78, 251
AluI	AGCT	2 cut(s)	78, 251
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	4 cut(s)	75, 122, 251, 272
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	87, 109, 238, 284
BccI	CCATC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	8 cut(s)	70, 73, 76, 123, 229, 252, 273, 276
BlsI	GCNGC	8 cut(s)	71, 74, 77, 124, 230, 253, 274, 277
BmiI	GGNNCC	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	19, 181, 187
Bse3DI	GCAATG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	19, 181, 187
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	87, 109, 238, 284
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	5 cut(s)	70, 73, 127, 228, 276
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	19, 181, 187
BssMI	GATC	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 119, 208, 281
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	4 cut(s)	87, 109, 238, 284
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	204
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	139, 243
CviJI	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviKI_1	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviQI	GTAC	2 cut(s)	139, 243
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	217
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	8 cut(s)	70, 73, 76, 123, 229, 252, 273, 276
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	8 cut(s)	70, 73, 76, 123, 229, 252, 273, 276
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	8 cut(s)	70, 73, 76, 123, 229, 252, 273, 276
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	164, 236
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	4 cut(s)	159, 180, 233, 259
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 119, 208, 281
HpySE526I	ACGT	1 cut(s)	259
HspAI	GCGC	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	4 cut(s)	74, 132, 162, 168
Lsp1109I	GCAGC	4 cut(s)	87, 109, 238, 284
MaeII	ACGT	1 cut(s)	259
MalI	GATC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	103, 181
MfeI	CAATTG	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	6 cut(s)	24, 27, 62, 126, 186, 222
MseI	TTAA	1 cut(s)	286
MspI	CCGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	75, 119, 208, 281
NdeII	GATC	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	8 cut(s)	71, 74, 77, 124, 230, 253, 274, 277
Ppu21I	YACGTR	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	140, 244
RsaNI	GTAC	2 cut(s)	139, 243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	8 cut(s)	70, 73, 76, 123, 229, 252, 273, 276
Sau3AI	GATC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	80, 101, 197, 244, 253, 262
SfcI	CTRYAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	70, 73, 127, 228, 276
TaiI	ACGT	1 cut(s)	262
TasI	AATT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	4 cut(s)	72, 75, 231, 278
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	4 cut(s)	75, 122, 251, 272
TspRI	CASTG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.