Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

13351654 .. 13353341

Gene Structure 1688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACAACAACAACCCCCATTAACCACCAAGTTGATCAAGATCATATGCTACTCATCTCTCAGTTGTACCCTGATGTTTACACCCAAATTGTACCCCCGCAAGGAGCAGCGACTAAACCGCGACGCCGCCGTAAGAAGAGCAAGAGCGGAGAAGCTGGTGGCGCCGGAGCCAAGAAGAGGAAGCTCACTGAGGAACAAGTGACTCTTCTAGAGCTCAATTTCGGCAACGAGCATAAACTGGAGTCTGAGAAGAAGGACCGGCTCGCTTCCGAGCTTGGACTCGACCCTCGTCAAGTGGCTGTTTGGTTTCAGAACCGAAGGGCTCGATGGAAGAACAAGAAGCTGGAGGAAGAGTACTCTATCTTGAAGAAGGATCATGAAAACGTCGTCCTTGAGAAATGCAAGCTTGAATCCGAGACGGAAAAGCTGAAGGAGCAACTCTCGGAGGCGGAGAAGGAGATCCACAGGCTGTCGGAGCGTGCTGAAGGCGGTGGTTTGAGCAACAGCCCGAGCTCCTCGCTGTCGATGGAAGCGAATATTGATCCTCCGTTTTTCGGAGAATTTGGGGTGGAGGAGTATGATGGTGTTTTCTACATGCCCCAAAACAACTACATTAATGGCATGGAATGGATGAACCAGTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

215

Amino Acids

24.75

Weight (kDa)

6.04

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	59 - 112	9e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	121
AciI	CCGC	6 cut(s)	98, 119, 127, 147, 449, 489
AclWI	GGATC	3 cut(s)	381, 454, 536
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	2 cut(s)	449, 504
AcyI	GRCGYC	2 cut(s)	124, 162
AfaI	GTAC	3 cut(s)	68, 93, 356
AfiI	CCNNNNNNNGG	3 cut(s)	101, 177, 554
AgsI	TTSAA	2 cut(s)	367, 410
AluBI	AGCT	8 cut(s)	155, 184, 214, 274, 343, 406, 427, 513
AluI	AGCT	8 cut(s)	155, 184, 214, 274, 343, 406, 427, 513
Alw21I	GWGCWC	2 cut(s)	216, 515
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	381, 454, 536
Ama87I	CYCGRG	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	560
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	3 cut(s)	216, 325, 515
Bbv12I	GWGCWC	2 cut(s)	216, 515
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	3 cut(s)	321, 520, 575
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	108, 127
BlsI	GCNGC	2 cut(s)	109, 128
BmcAI	AGTACT	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	163, 169
BoxI	GACNNNNGTC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	260, 365
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	124, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 177, 554
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	243, 637
Bse8I	GATNNNNATC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	636
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	101, 177, 554
BseMII	CTCAG	3 cut(s)	74, 180, 237
BseNI	ACTGG	2 cut(s)	243, 637
BseRI	GAGGAG	2 cut(s)	505, 587
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	216, 515
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	165, 259
BslI	CCNNNNNNNGG	3 cut(s)	101, 177, 554
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	3 cut(s)	216, 325, 515
Bsp143I	GATC	5 cut(s)	34, 40, 373, 459, 541
BspACI	CCGC	6 cut(s)	98, 119, 127, 147, 449, 489
BspCNI	CTCAG	3 cut(s)	73, 181, 238
BspFNI	CGCG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	163, 169
BspPI	GGATC	3 cut(s)	381, 454, 536
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	243, 637
BssAI	RCCGGY	1 cut(s)	258
BssMI	GATC	5 cut(s)	34, 40, 373, 459, 541
BssNI	GRCGYC	2 cut(s)	124, 162
Bst6I	CTCTTC	4 cut(s)	131, 170, 210, 345
BstACI	GRCGYC	2 cut(s)	124, 162
BstC8I	GCNNGC	3 cut(s)	264, 404, 480
BstDEI	CTNAG	3 cut(s)	60, 189, 246
BstF5I	GGATG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	37, 43, 376, 462, 544
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	5 cut(s)	34, 40, 373, 459, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 433, 475
BstNSI	RCATGY	1 cut(s)	598
BstPAI	GACNNNNGTC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	264, 404, 480
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	67, 92, 355
CviAII	CATG	3 cut(s)	377, 595, 622
CviQI	GTAC	3 cut(s)	67, 92, 355
DdeI	CTNAG	3 cut(s)	60, 189, 246
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	5 cut(s)	36, 42, 375, 461, 543
DpnII	GATC	5 cut(s)	34, 40, 373, 459, 541
Eam1104I	CTCTTC	4 cut(s)	131, 170, 210, 345
EarI	CTCTTC	4 cut(s)	131, 170, 210, 345
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	2 cut(s)	214, 513
Eco24I	GRGCYC	3 cut(s)	216, 325, 515
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	2 cut(s)	214, 513
Eco57I	CTGAAG	2 cut(s)	449, 504
Eco88I	CYCGRG	1 cut(s)	508
EcoICRI	GAGCTC	2 cut(s)	214, 513
EcoT38I	GRGCYC	3 cut(s)	216, 325, 515
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	3 cut(s)	380, 598, 625
FaiI	YATR	9 cut(s)	45, 47, 234, 378, 579, 596, 623, 642, 644
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	3 cut(s)	376, 594, 621
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	108, 127
FokI	GGATG	1 cut(s)	643
FriOI	GRGCYC	3 cut(s)	216, 325, 515
Fsp4HI	GCNGC	2 cut(s)	108, 127
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	108, 127
GsuI	CTGGAG	2 cut(s)	260, 365
HaeII	RGCGCY	1 cut(s)	165
HapII	CCGG	2 cut(s)	165, 259
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	124, 162
Hin1II	CATG	3 cut(s)	380, 598, 625
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	4 cut(s)	202, 242, 279, 410
HpaII	CCGG	2 cut(s)	165, 259
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	7 cut(s)	247, 271, 312, 415, 445, 475, 557
Hpy188III	TCNNGA	4 cut(s)	38, 209, 364, 377
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	126, 389
HpyAV	CCTTC	6 cut(s)	247, 312, 364, 424, 448, 479
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 433, 475
HpyF3I	CTNAG	3 cut(s)	60, 189, 246
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	2 cut(s)	124, 162
Hsp92II	CATG	3 cut(s)	380, 598, 625
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	34, 40, 373, 459, 541
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	5 cut(s)	104, 167, 433, 475, 518
LpnPI	CCDG	7 cut(s)	84, 141, 178, 224, 272, 329, 451
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	36, 42, 375, 461, 543
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	5 cut(s)	34, 40, 373, 459, 541
MboII	GAAGA	7 cut(s)	148, 187, 197, 262, 343, 362, 379
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	216, 325, 515
MluCI	AATT	3 cut(s)	87, 217, 560
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	196, 251, 273
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	8 cut(s)	171, 184, 297, 340, 439, 526, 555, 565
MseI	TTAA	2 cut(s)	21, 615
MspI	CCGG	2 cut(s)	165, 259
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	161, 433, 475
NarI	GGCGCC	1 cut(s)	162
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	34, 40, 373, 459, 541
NlaIII	CATG	3 cut(s)	380, 598, 625
NlaIV	GGNNCC	2 cut(s)	163, 169
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	598
PagI	TCATGA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	109, 128
PleI	GAGTC	3 cut(s)	196, 250, 273
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	3 cut(s)	196, 250, 273
PshAI	GACNNNNGTC	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	2 cut(s)	216, 515
PspN4I	GGNNCC	2 cut(s)	163, 169
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	3 cut(s)	68, 93, 356
RsaNI	GTAC	3 cut(s)	67, 92, 355
SacI	GAGCTC	2 cut(s)	216, 515
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	21, 615
SatI	GCNGC	2 cut(s)	108, 127
Sau3AI	GATC	5 cut(s)	34, 40, 373, 459, 541
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	3 cut(s)	196, 251, 273
SduI	GDGCHC	3 cut(s)	216, 325, 515
SetI	ASST	9 cut(s)	157, 186, 216, 276, 345, 387, 408, 429, 515
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	87, 217, 560
SsiI	CCGC	6 cut(s)	98, 119, 127, 147, 449, 489
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	2 cut(s)	216, 515
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	282, 325, 524
TasI	AATT	3 cut(s)	87, 217, 560
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	21, 615
Tru9I	TTAA	2 cut(s)	21, 615
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	393, 647
TspGWI	ACGGA	2 cut(s)	434, 537
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	256
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	1 cut(s)	560
XbaI	TCTAGA	1 cut(s)	208
XceI	RCATGY	1 cut(s)	598
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.