Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

29925743 .. 29927580

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGGTGGTAGCTCCGTTGCAGGGCAATTTCCATCTCCAGAAGAGTCGCTGCTCTGCTTGTGCATGCCCAGCTGTCCGCACCTGGAAATGTATGAAACCCTTCCCTCTCTGCTTTTGGTTCAGGATTTGGTTCTTGTATATGGAATTTTTGTTGAGAAATTTGGATACCCAGAAAAGGATTTTTGATTTTGATGAAGGTTTTTTAGCCATCAGGAGGAAGACCACCAGGACTGGAAGGATGTGGTATCTGTGCAATGTCCCACCCAGGTTTAAGAGCTGTTTCAGGGAAGATTTAGTGATCTGTGACTTTGGATCTGGTTGGAAAGCCACTGATTACATAGTGAGATTACATCCCCTTAATTTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

123

Amino Acids

14.73

Weight (kDa)

9.43

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	146, 160
AfiI	CCNNNNNNNGG	3 cut(s)	23, 177, 216
AjnI	CCWGG	3 cut(s)	83, 227, 266
AluBI	AGCT	3 cut(s)	14, 74, 279
AluI	AGCT	3 cut(s)	14, 74, 279
AlwI	GGATC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	2 cut(s)	146, 160
Asp700I	GAANNNNTTC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	42, 218
BciT130I	CCWGG	3 cut(s)	85, 229, 268
BciVI	GTATCC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	3 cut(s)	85, 229, 268
BmrFI	CCNGG	3 cut(s)	85, 229, 268
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 177, 216
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	3 cut(s)	85, 229, 268
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	246, 352
BseLI	CCNNNNNNNGG	3 cut(s)	23, 177, 216
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	23, 177, 216
BsmFI	GGGAC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	300, 314
BspACI	CCGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	300, 314
Bst2UI	CCWGG	3 cut(s)	85, 229, 268
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	246, 352
BstKTI	GATC	2 cut(s)	303, 317
BstMBI	GATC	2 cut(s)	300, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	3 cut(s)	85, 229, 268
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	3 cut(s)	83, 227, 266
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	246, 352
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	5 cut(s)	14, 74, 209, 279, 329
CviKI_1	RGCY	5 cut(s)	14, 74, 209, 279, 329
DpnI	GATC	2 cut(s)	302, 316
DpnII	GATC	2 cut(s)	300, 314
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	83, 227, 266
FaeI	CATG	1 cut(s)	69
FaiI	YATR	5 cut(s)	67, 95, 141, 143, 341
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	253, 339
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	69
HinfI	GANTC	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	40, 124, 214
HpyAV	CCTTC	3 cut(s)	112, 191, 231
HpyCH4V	TGCA	3 cut(s)	22, 65, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	300, 314
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	302, 316
MboI	GATC	2 cut(s)	300, 314
MboII	GAAGA	3 cut(s)	55, 232, 302
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	4 cut(s)	28, 146, 160, 361
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	117, 210
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	273, 360
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	3 cut(s)	85, 229, 268
MvaI	CCWGG	3 cut(s)	85, 229, 268
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	300, 314
NlaIII	CATG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	83, 227, 266
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	3 cut(s)	83, 227, 266
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	273, 360
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	300, 314
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	85, 229, 268
SetI	ASST	6 cut(s)	16, 76, 86, 202, 272, 281
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	4 cut(s)	28, 146, 160, 361
SsiI	CCGC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	83, 227, 266
TasI	AATT	4 cut(s)	28, 146, 160, 361
Tru1I	TTAA	2 cut(s)	273, 360
Tru9I	TTAA	2 cut(s)	273, 360
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	110, 210
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	146, 160
XceI	RCATGY	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.