Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

29885532 .. 29886582

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTAAGGGAACTGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTGAGGTGTGGCCGTCGCAGCTTCCATCTCCAGAAGAGTCGCTGCTCTGCTTGTGCCTACCCAGCTGCCCGCACCAGGAAATTCAACTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACCGGAAGGATGAGGTATCTGCGCAATGTCCCACGCAGGTTCAAGAGCGGTTTCAGAGAAGGTACCGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

11.96

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	1.4e-26	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	127, 228
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	132, 165
AgsI	TTSAA	2 cut(s)	142, 223
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	5 cut(s)	78, 122, 251, 272, 278
AluI	AGCT	5 cut(s)	78, 122, 251, 272, 278
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	67, 156
ApeKI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
ApoI	RAATTY	1 cut(s)	137
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BccI	CCATC	2 cut(s)	90, 167
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
BlsI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
Bme1390I	CCNGG	2 cut(s)	133, 178
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	181, 244
BmrFI	CCNGG	2 cut(s)	133, 178
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	71, 166
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 165
Bse1I	ACTGG	2 cut(s)	19, 149
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	132, 165
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	19, 149
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	69, 158
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	177, 183
BslFI	GGGAC	2 cut(s)	193, 194
BslI	CCNNNNNNNGG	2 cut(s)	132, 165
BsmFI	GGGAC	2 cut(s)	193, 194
BsnI	GGCC	2 cut(s)	69, 158
BspACI	CCGC	2 cut(s)	127, 228
BspANI	GGCC	2 cut(s)	69, 158
BspLI	GGNNCC	2 cut(s)	181, 244
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	19, 149
BssECI	CCNNGG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	131, 176
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	69, 158
BtsCI	GGATG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	7 cut(s)	69, 78, 122, 158, 251, 272, 278
CviKI_1	RGCY	7 cut(s)	69, 78, 122, 158, 251, 272, 278
CviQI	GTAC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaqI	GGGAC	2 cut(s)	193, 194
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	2 cut(s)	71, 166
HaeIII	GGCC	2 cut(s)	69, 158
HapII	CCGG	2 cut(s)	177, 183
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	177, 183
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	3 cut(s)	88, 163, 223
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	148, 180, 233, 259
HpyCH4V	TGCA	2 cut(s)	254, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
HspAI	GCGC	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	9 cut(s)	101, 118, 130, 132, 145, 148, 190, 196, 202
Lsp1109I	GCAGC	5 cut(s)	86, 87, 109, 238, 259
MbiI	CCGCTC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	103, 181, 274
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	24, 27, 54, 62, 159, 186
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	177, 183
MspR9I	CCNGG	2 cut(s)	133, 178
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
NciI	CCSGG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	181, 244
NsbI	TGCGCA	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	181, 244
PspPI	GGNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	133, 178
SetI	ASST	9 cut(s)	65, 80, 124, 197, 221, 244, 253, 274, 280
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	127, 228
StyD4I	CCNGG	2 cut(s)	131, 176
StyI	CCWWGG	1 cut(s)	257
TasI	AATT	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.