Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

8233906 .. 8234392

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGCAAAGGAACAGGAAGTTTCGGAAAGAGGAGGAACAAGACCCACACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCACCTCCAGAAGAGCCGCTGCTCCGCCTGCGCCTACCCTGCTGCCCGTCTCAGAAAATATAACTGGAGTGAGAAGGCGCTGCGCCGAAAGACTACCGGAACTGGGCGGATGAGGTACCTGAGGAATGTGCCGAGGAGGTTCAAGAGCGGCTTCCTTGAAGGTACACAGGCTGCTCCAAGGAGCAAGGGAGCTGCTGCTGCTTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

97

Amino Acids

10.75

Weight (kDa)

11.8

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	1.2e-27	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	8 cut(s)	61, 66, 70, 73, 97, 105, 187, 228
AcoI	YGGCCR	1 cut(s)	67
AfaI	GTAC	2 cut(s)	197, 244
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	223, 239
AluBI	AGCT	2 cut(s)	78, 272
AluI	AGCT	2 cut(s)	78, 272
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	8 cut(s)	75, 99, 122, 160, 251, 272, 275, 278
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	3 cut(s)	113, 160, 165
AxyI	CCTNAGG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	8 cut(s)	86, 87, 109, 147, 238, 259, 262, 265
BcoDI	GTCTC	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	71, 166
BsaJI	CCNNGG	2 cut(s)	212, 257
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	149, 187
Bse21I	CCTNAGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	212, 257
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	145, 191
BseNI	ACTGG	2 cut(s)	149, 187
BseRI	GAGGAG	2 cut(s)	46, 229
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	8 cut(s)	86, 87, 109, 147, 238, 259, 262, 265
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	69
BspACI	CCGC	8 cut(s)	61, 66, 70, 73, 97, 105, 187, 228
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	144, 192
BspLI	GGNNCC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	149, 187
BssECI	CCNNGG	2 cut(s)	212, 257
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	131, 200
BstF5I	GGATG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	113, 160, 165
BstMAI	GTCTC	1 cut(s)	134
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 75, 108, 119, 278
BstV1I	GCAGC	8 cut(s)	86, 87, 109, 147, 238, 259, 262, 265
BstZI	CGGCCG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	109
CciNI	GCGGCCGC	1 cut(s)	67
CfoI	GCGC	3 cut(s)	113, 160, 165
Csp6I	GTAC	2 cut(s)	196, 243
CviJI	RGCY	6 cut(s)	69, 78, 96, 231, 251, 272
CviKI_1	RGCY	6 cut(s)	69, 78, 96, 231, 251, 272
CviQI	GTAC	2 cut(s)	196, 243
DdeI	CTNAG	2 cut(s)	131, 200
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	94, 202
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	134
FaiI	YATR	2 cut(s)	141, 289
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FokI	GGATG	1 cut(s)	202
GlaI	GCGC	3 cut(s)	112, 159, 164
GsuI	CTGGAG	2 cut(s)	71, 166
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	3 cut(s)	113, 160, 165
Hin6I	GCGC	3 cut(s)	111, 158, 163
HinP1I	GCGC	3 cut(s)	111, 158, 163
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	26, 134
Hpy188III	TCNNGA	2 cut(s)	88, 223
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	148, 233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 75, 108, 119, 278
HpyF3I	CTNAG	2 cut(s)	131, 200
HspAI	GCGC	3 cut(s)	111, 158, 163
KpnI	GGTACC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	4 cut(s)	107, 259, 261, 269
LpnPI	CCDG	8 cut(s)	101, 121, 130, 132, 168, 190, 212, 233
Lsp1109I	GCAGC	8 cut(s)	86, 87, 109, 147, 238, 259, 262, 265
MbiI	CCGCTC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	103
MnlI	CCTC	7 cut(s)	24, 27, 95, 186, 195, 207, 210
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	177
MteI	GCGCNGCGC	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	72, 75, 108, 119, 278
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	237
NotI	GCGGCCGC	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	197
RsaI	GTAC	2 cut(s)	197, 244
RsaNI	GTAC	2 cut(s)	196, 243
SapI	GCTCTTC	1 cut(s)	86
SetI	ASST	7 cut(s)	80, 87, 197, 201, 221, 244, 274
SsiI	CCGC	8 cut(s)	61, 66, 70, 73, 97, 105, 187, 228
StyI	CCWWGG	1 cut(s)	257
TauI	GCSGC	5 cut(s)	69, 72, 75, 99, 231
TseI	GCWGC	8 cut(s)	75, 99, 122, 160, 251, 272, 275, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.