Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

63630894 .. 63631843

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGAAAAGGAACCGGTAGCTTTGGCAAGCGCCGCAACAAGACCCACACTCTCTGTGTCCGATGTGGACGCCGGAGCTTCCACCTCCAGAAGTCTCGCTGCTCCGCCTGTGCTTACCCCGCCGCTCGCCTCAGAAAATATAACTGGAGCGAGAAGGCTCTGCGCAGAAAGACCACCGGAACCGGGCGCATGAGGTACCTTCGCCATGTGCCGAGGAGGTTCAAGAGCGGCTTCCTTGAAGGTACACAAGCTAAGCCAAGGAGCAAGGGAACTGCTACTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

94

Amino Acids

10.72

Weight (kDa)

11.8

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	1.1e-27	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	2 cut(s)	125, 228
AciI	CCGC	5 cut(s)	34, 105, 120, 123, 228
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	197, 244
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	223, 239
AluBI	AGCT	3 cut(s)	21, 78, 251
AluI	AGCT	3 cut(s)	21, 78, 251
Alw26I	GTCTC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	99
AsiGI	ACCGGT	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	3 cut(s)	33, 165, 189
AsuC2I	CCSGG	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	4 cut(s)	34, 100, 123, 229
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	35, 101, 124, 230
Bme1390I	CCNGG	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	13, 181, 197
BmrFI	CCNGG	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	71, 166
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	212, 257
BsaWI	WCCGGW	2 cut(s)	14, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	212, 257
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	195
BshTI	ACCGGT	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	15, 73, 177, 183
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	5 cut(s)	34, 105, 120, 123, 228
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	13, 181, 197
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	2 cut(s)	125, 228
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	212, 257
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	29, 127
BstDEI	CTNAG	2 cut(s)	131, 252
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	3 cut(s)	33, 165, 189
BstMAI	GTCTC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 119
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	29, 127
CfoI	GCGC	3 cut(s)	33, 165, 189
Cfr10I	RCCGGY	1 cut(s)	14
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	196, 243
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	2 cut(s)	190, 206
CviJI	RGCY	6 cut(s)	21, 78, 158, 231, 251, 256
CviKI_1	RGCY	6 cut(s)	21, 78, 158, 231, 251, 256
CviQI	GTAC	2 cut(s)	196, 243
DdeI	CTNAG	2 cut(s)	131, 252
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	2 cut(s)	193, 209
FaiI	YATR	3 cut(s)	141, 191, 207
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	2 cut(s)	189, 205
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	34, 100, 123, 229
Fsp4HI	GCNGC	4 cut(s)	34, 100, 123, 229
FspBI	CTAG	1 cut(s)	283
FspI	TGCGCA	1 cut(s)	164
GlaI	GCGC	3 cut(s)	32, 164, 188
GluI	GCNGC	4 cut(s)	34, 100, 123, 229
GsuI	CTGGAG	2 cut(s)	71, 166
HaeII	RGCGCY	1 cut(s)	34
HapII	CCGG	4 cut(s)	15, 73, 177, 183
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	3 cut(s)	33, 165, 189
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	193, 209
Hin6I	GCGC	3 cut(s)	31, 163, 187
HinP1I	GCGC	3 cut(s)	31, 163, 187
HpaII	CCGG	4 cut(s)	15, 73, 177, 183
Hpy166II	GTNNAC	2 cut(s)	68, 245
Hpy188I	TCNGA	2 cut(s)	62, 134
Hpy188III	TCNNGA	2 cut(s)	88, 223
Hpy8I	GTNNAC	2 cut(s)	68, 245
HpyAV	CCTTC	3 cut(s)	148, 209, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 119
HpyF3I	CTNAG	2 cut(s)	131, 252
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	193, 209
HspAI	GCGC	3 cut(s)	31, 163, 187
KpnI	GGTACC	1 cut(s)	199
LmnI	GCTCC	4 cut(s)	75, 107, 147, 261
LpnPI	CCDG	7 cut(s)	28, 86, 101, 121, 130, 190, 196
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	283
MbiI	CCGCTC	2 cut(s)	125, 228
MnlI	CCTC	5 cut(s)	95, 140, 186, 207, 210
MspI	CCGG	4 cut(s)	15, 73, 177, 183
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	33, 119
NciI	CCSGG	1 cut(s)	184
NlaIII	CATG	2 cut(s)	193, 209
NlaIV	GGNNCC	3 cut(s)	13, 181, 197
NmeAIII	GCCGAG	1 cut(s)	237
NsbI	TGCGCA	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	35, 101, 124, 230
PspN4I	GGNNCC	3 cut(s)	13, 181, 197
RsaI	GTAC	2 cut(s)	197, 244
RsaNI	GTAC	2 cut(s)	196, 243
SatI	GCNGC	4 cut(s)	34, 100, 123, 229
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	8 cut(s)	23, 80, 87, 197, 201, 221, 244, 253
SsiI	CCGC	5 cut(s)	34, 105, 120, 123, 228
SspMI	CTAG	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	257
TauI	GCSGC	3 cut(s)	36, 125, 231
TseI	GCWGC	1 cut(s)	99
XspI	CTAG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.