Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

76069405 .. 76069953

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0567600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTATCAGGATGCAGAGCATAAGTGGGTTAGTGAGGCTAAACGAGTGAGACATGAGAAAATGAAGCAGAAGAGGGAAGATGTCAAGGCAAAGCTCATTGAAGAGGCACCAGAAGGTACTCCTATTGAATCAATAGAAGTGGCTTTGAATGATGAGATTGCAATTATGGTTGAGGAGTGTAGGAGAAAAGGTGGCAAGGTTCAAGGTGTAGGTGCTTTCCCTCGCTTGGATATCTCGTCTTCTTCGATCTTCTTCTTCAATGCCAATAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

91

Amino Acids

10.42

Weight (kDa)

6.74

Isoelectric Point (pI)

80.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	101, 128, 148, 203, 259
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	106
BssMI	GATC	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	65, 96
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	3 cut(s)	38, 94, 143
CviKI_1	RGCY	3 cut(s)	38, 94, 143
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	65, 96
EarI	CTCTTC	2 cut(s)	65, 96
Eco32I	GATATC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	232
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	21, 54, 167
FatI	CATG	1 cut(s)	52
FokI	GGATG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	14, 161
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	1 cut(s)	123
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	8 cut(s)	82, 89, 113, 231, 234, 241, 244, 247
MluCI	AATT	2 cut(s)	162, 269
MnlI	CCTC	5 cut(s)	28, 66, 97, 166, 231
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	246
SetI	ASST	6 cut(s)	96, 118, 193, 201, 208, 214
Sse9I	AATT	2 cut(s)	162, 269
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	162, 269
TfiI	GAWTC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	77
XapI	RAATTY	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.