Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

42164664 .. 42165324

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTGGTGGTAGCTCTGTTGCAGGGCAACTTCCATCTCCAGAAGAGTCACTGCTCTACTTGTGCTTACCTAGCTGTCCGCACCAGGAAATTCAATTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACTGGAAGGATGTGGTATCTGTGCAATGTCTCACAAAGGTTTAAGAGCAGTTTCAGGGAAGATGCTGATCCTTTTAGTTTTATACTCCTTGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

76

Amino Acids

8.85

Weight (kDa)

10.15

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	11 - 37	2.3e-08	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	14, 74
AluI	AGCT	2 cut(s)	14, 74
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	128
BccI	CCATC	2 cut(s)	42, 119
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	85, 130
BmrFI	CCNGG	2 cut(s)	85, 130
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	83, 128
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
CviJI	RGCY	3 cut(s)	14, 74, 110
CviKI_1	RGCY	3 cut(s)	14, 74, 110
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	83
FaiI	YATR	2 cut(s)	215, 229
FaqI	GGGAC	1 cut(s)	145
FokI	GGATG	1 cut(s)	154
FspBI	CTAG	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	40, 115
HpyAV	CCTTC	2 cut(s)	100, 132
HpyCH4V	TGCA	2 cut(s)	22, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	8, 53, 70, 97, 100, 120, 142, 172
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	55, 133, 203
MfeI	CAATTG	1 cut(s)	94
MluCI	AATT	2 cut(s)	89, 94
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	85, 130
MunI	CAATTG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	85, 130
SetI	ASST	4 cut(s)	16, 72, 76, 173
SfaNI	GCATC	1 cut(s)	184
Sse9I	AATT	2 cut(s)	89, 94
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	83, 128
TasI	AATT	2 cut(s)	89, 94
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspRI	CASTG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.