Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

11372221 .. 11373267

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCAACTCCAAAGCCCAAGATAGACAAAACCAAACACAGATGGGCTGCTAGAGACACGCCGGCCCAGGCTGACCACTCCACCAGCTACTCTAAAACCCTAGTTATCTTCCACATGCGCAGGTTCCTCGGGAAGGGAACTGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTCCGGTGTGGCCGCCGCAGCTTCCATCTACAGAAGAGTAGGTGCTCTGCTTGTGCTTTCCCTGCTGCCCGCAAGAGGAAGTACAATTGGAGTGAAAAAGCAATCCGAAGGAAGACCACTGGAACAGGAAGGATGAGGTATCTCCGCAATGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAAGGTACCGAAGCTGCACCACGTAAGAAGGGAGCAGCCGCAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

138

Amino Acids

15.68

Weight (kDa)

11.73

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	111
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	6 cut(s)	196, 199, 253, 328, 354, 402
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	266, 370
AfiI	CCNNNNNNNGG	2 cut(s)	133, 258
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	3 cut(s)	87, 204, 377
AluI	AGCT	3 cut(s)	87, 204, 377
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	63, 193
ApeKI	GCWGC	5 cut(s)	47, 201, 248, 377, 398
Asp718I	GGTACC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	5 cut(s)	34, 213, 235, 364, 410
BccI	CCATC	2 cut(s)	36, 216
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	51, 101
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	9 cut(s)	48, 196, 199, 202, 249, 355, 378, 399, 402
BlsI	GCNGC	9 cut(s)	49, 197, 200, 203, 250, 356, 379, 400, 403
Bme1390I	CCNGG	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	125, 370
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	66, 127
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 258
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	145, 307
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	66, 127
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	133, 258
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	145, 307
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	5 cut(s)	34, 213, 235, 364, 410
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	65, 195
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	62, 187
BslI	CCNNNNNNNGG	2 cut(s)	133, 258
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	65, 195
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	230
BspACI	CCGC	6 cut(s)	196, 199, 253, 328, 354, 402
BspANI	GGCC	2 cut(s)	65, 195
BspLI	GGNNCC	2 cut(s)	125, 370
BspMI	ACCTGC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	145, 307
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	66, 127
Bst2UI	CCWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	63, 253
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 245, 407
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	5 cut(s)	34, 213, 235, 364, 410
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	65, 195
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	63, 253
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	265, 369
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	2 cut(s)	265, 369
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	118
FaiI	YATR	1 cut(s)	116
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	9 cut(s)	48, 196, 199, 202, 249, 355, 378, 399, 402
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	9 cut(s)	48, 196, 199, 202, 249, 355, 378, 399, 402
FspBI	CTAG	2 cut(s)	51, 101
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	9 cut(s)	48, 196, 199, 202, 249, 355, 378, 399, 402
HaeIII	GGCC	2 cut(s)	65, 195
HapII	CCGG	2 cut(s)	62, 187
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	2 cut(s)	62, 187
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	290, 362
Hpy188III	TCNNGA	2 cut(s)	130, 349
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	5 cut(s)	127, 285, 306, 359, 385
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 245, 407
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	5 cut(s)	34, 213, 235, 364, 410
MaeI	CTAG	2 cut(s)	51, 101
MaeII	ACGT	1 cut(s)	385
MbiI	CCGCTC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	100, 229, 307
MfeI	CAATTG	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	7 cut(s)	137, 150, 153, 188, 252, 312, 348
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	412
MspI	CCGG	2 cut(s)	62, 187
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	201, 245, 407
NaeI	GCCGGC	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	125, 370
NsbI	TGCGCA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	9 cut(s)	49, 197, 200, 203, 250, 356, 379, 400, 403
Ppu21I	YACGTR	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	125, 370
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	266, 370
RsaNI	GTAC	2 cut(s)	265, 369
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	9 cut(s)	48, 196, 199, 202, 249, 355, 378, 399, 402
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	8 cut(s)	89, 125, 206, 227, 323, 370, 379, 388
SfcI	CTRYAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	6 cut(s)	196, 199, 253, 328, 354, 402
SspMI	CTAG	2 cut(s)	51, 101
StyD4I	CCNGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	388
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	4 cut(s)	198, 201, 357, 404
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	5 cut(s)	47, 201, 248, 377, 398
TspRI	CASTG	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	131
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	2 cut(s)	51, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.