Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

4942647 .. 4944161

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCCTTACTGTTGGGCAACATCTCTTAAAGAAACAAATGACCATTTAGTAATTTGTGATCGCGCTCTAAATGATCAAAATAAGATAAATTCATATAACTGGAGCGAGAAGGCTCTGCGCAGAAAGACCACCGGAACCGGGCGCATGAGGTACCTTCGCCATGTGCCGAGGAGGTTCAAGAGCGGCTTCCTTGAAGGTACACAAGCTAAGCCAAGGAGCAAGGGAACTGCTACTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

79

Amino Acids

9.13

Weight (kDa)

10.35

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	183
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	2 cut(s)	152, 199
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	178, 194
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	88
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	3 cut(s)	65, 120, 144
AsuC2I	CCSGG	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	139
BfaI	CTAG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	184
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	136, 152
BmrFI	CCNGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	167, 212
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	167, 212
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	132, 138
BslI	CCNNNNNNNGG	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	58, 73
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	136, 152
BspT107I	GGYRCC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	167, 212
BssMI	GATC	2 cut(s)	58, 73
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	3 cut(s)	65, 120, 144
BstKTI	GATC	2 cut(s)	61, 76
BstMBI	GATC	2 cut(s)	58, 73
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	63
CfoI	GCGC	3 cut(s)	65, 120, 144
Csp6I	GTAC	2 cut(s)	151, 198
CviAII	CATG	2 cut(s)	145, 161
CviJI	RGCY	4 cut(s)	113, 186, 206, 211
CviKI_1	RGCY	4 cut(s)	113, 186, 206, 211
CviQI	GTAC	2 cut(s)	151, 198
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	60, 75
DpnII	GATC	2 cut(s)	58, 73
Eco130I	CCWWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	148, 164
FaiI	YATR	4 cut(s)	94, 96, 146, 162
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	2 cut(s)	144, 160
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	238
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	3 cut(s)	64, 119, 143
GluI	GCNGC	1 cut(s)	184
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	2 cut(s)	132, 138
HhaI	GCGC	3 cut(s)	65, 120, 144
Hin1II	CATG	2 cut(s)	148, 164
Hin6I	GCGC	3 cut(s)	63, 118, 142
HinP1I	GCGC	3 cut(s)	63, 118, 142
HpaII	CCGG	2 cut(s)	132, 138
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	103, 164, 188
HpyCH4III	ACNGT	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	148, 164
HspAI	GCGC	3 cut(s)	63, 118, 142
KpnI	GGTACC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	58, 73
LmnI	GCTCC	2 cut(s)	102, 216
LpnPI	CCDG	3 cut(s)	85, 145, 151
MaeI	CTAG	1 cut(s)	238
MalI	GATC	2 cut(s)	60, 75
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	2 cut(s)	58, 73
MluCI	AATT	2 cut(s)	51, 88
MnlI	CCTC	3 cut(s)	141, 162, 165
MseI	TTAA	1 cut(s)	27
MspI	CCGG	2 cut(s)	132, 138
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	58, 73
NlaIII	CATG	2 cut(s)	148, 164
NlaIV	GGNNCC	2 cut(s)	136, 152
NmeAIII	GCCGAG	1 cut(s)	192
NsbI	TGCGCA	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	136, 152
RsaI	GTAC	2 cut(s)	152, 199
RsaNI	GTAC	2 cut(s)	151, 198
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	58, 73
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	5 cut(s)	152, 156, 176, 199, 208
Sse9I	AATT	2 cut(s)	51, 88
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	2 cut(s)	51, 88
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	81
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.