Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

5454762 .. 5455942

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGAAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

95

Amino Acids

10.77

Weight (kDa)

11.86

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	2e-26	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	181, 244
AfiI	CCNNNNNNNGG	2 cut(s)	165, 258
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	3 cut(s)	122, 275, 284
AluI	AGCT	3 cut(s)	122, 275, 284
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 258
Bse1I	ACTGG	3 cut(s)	149, 181, 232
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	84, 195
BseLI	CCNNNNNNNGG	2 cut(s)	165, 258
BseNI	ACTGG	3 cut(s)	149, 181, 232
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	165, 258
BsnI	GGCC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	149, 181, 232
BssECI	CCNNGG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	84, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 281
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	84, 195
Cac8I	GCNNGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	180, 243
CviJI	RGCY	7 cut(s)	107, 122, 158, 251, 256, 275, 284
CviKI_1	RGCY	7 cut(s)	107, 122, 158, 251, 256, 275, 284
CviQI	GTAC	2 cut(s)	180, 243
DraIII	CACNNNGTG	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	71, 202
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	183
HinfI	GANTC	3 cut(s)	43, 94, 231
HpaII	CCGG	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	3 cut(s)	88, 163, 223
Hpy99I	CGWCG	2 cut(s)	75, 219
HpyAV	CCTTC	3 cut(s)	148, 180, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 281
KpnI	GGTACC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	7 cut(s)	101, 130, 132, 148, 162, 196, 213
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	103, 181
MlyI	GAGTC	2 cut(s)	52, 103
MnlI	CCTC	6 cut(s)	24, 27, 126, 159, 186, 222
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	119, 281
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	51, 102
PpsI	GAGTC	2 cut(s)	51, 102
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	181, 244
RsaNI	GTAC	2 cut(s)	180, 243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	1 cut(s)	123
SchI	GAGTC	2 cut(s)	52, 103
SetI	ASST	5 cut(s)	124, 197, 244, 277, 286
SfaNI	GCATC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.