Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

38095688 .. 38096559

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGCAAAGGAACAGGCAGCTTCGGAAAGAGAAGGAACAAGACCCACACTCTGTGTGTGCGATGCGGACGCAGAAGCTTCCATCTCCAAAAGAGTCGTTGCTCAGCTTGTGCTTACCCCGCTGCCCGCCTTAGAAAATACAATTGGAGTGAGAAGGCGCTGCGCAGAAAGACAACCGGAACTGGGCGTATGAGGTACCTTCGCAATGTTCCAAGGAGGTTCAAGAGCAACTTCACAGAAGGCACACAAGCTGCTCCAAGGCGCAAGGGAACTGCTGCTGCTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

11.86

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	3 cut(s)	66, 120, 127
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	4 cut(s)	21, 78, 107, 251
AluI	AGCT	4 cut(s)	21, 78, 107, 251
ApeKI	GCWGC	7 cut(s)	18, 122, 160, 251, 275, 278, 281
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	3 cut(s)	160, 165, 264
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	7 cut(s)	30, 109, 147, 238, 262, 265, 268
BccI	CCATC	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	7 cut(s)	19, 123, 161, 252, 276, 279, 282
BlpI	GCTNAGC	1 cut(s)	103
BlsI	GCNGC	7 cut(s)	20, 124, 162, 253, 277, 280, 283
BmiI	GGNNCC	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	212, 257
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	212, 257
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	7 cut(s)	30, 109, 147, 238, 262, 265, 268
BshNI	GGYRCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	66, 120, 127
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	212, 257
BssT1I	CCWWGG	2 cut(s)	212, 257
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	103, 131
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	160, 165, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 281
BstV1I	GCAGC	7 cut(s)	30, 109, 147, 238, 262, 265, 268
BtgZI	GCGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	3 cut(s)	160, 165, 264
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	4 cut(s)	21, 78, 107, 251
CviKI_1	RGCY	4 cut(s)	21, 78, 107, 251
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	103, 131
DraIII	CACNNNGTG	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	212, 257
EcoT14I	CCWWGG	2 cut(s)	212, 257
ErhI	CCWWGG	2 cut(s)	212, 257
FaiI	YATR	2 cut(s)	191, 289
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FauI	CCCGC	2 cut(s)	127, 134
Fnu4HI	GCNGC	7 cut(s)	19, 123, 161, 252, 276, 279, 282
Fsp4HI	GCNGC	7 cut(s)	19, 123, 161, 252, 276, 279, 282
FspI	TGCGCA	1 cut(s)	164
GlaI	GCGC	3 cut(s)	159, 164, 263
GluI	GCNGC	7 cut(s)	19, 123, 161, 252, 276, 279, 282
HaeII	RGCGCY	1 cut(s)	161
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	3 cut(s)	160, 165, 264
Hin6I	GCGC	3 cut(s)	158, 163, 262
HinP1I	GCGC	3 cut(s)	158, 163, 262
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	4 cut(s)	27, 148, 209, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 281
HpyF3I	CTNAG	2 cut(s)	103, 131
HspAI	GCGC	3 cut(s)	158, 163, 262
KpnI	GGTACC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	2 cut(s)	168, 190
Lsp1109I	GCAGC	7 cut(s)	30, 109, 147, 238, 262, 265, 268
LweI	GCATC	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	142
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	2 cut(s)	186, 210
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	177
MteI	GCGCNGCGC	1 cut(s)	161
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	119, 281
NlaIV	GGNNCC	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	164
PkrI	GCNGC	7 cut(s)	20, 124, 162, 253, 277, 280, 283
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	7 cut(s)	19, 123, 161, 252, 276, 279, 282
SchI	GAGTC	1 cut(s)	103
SetI	ASST	7 cut(s)	23, 80, 109, 197, 201, 221, 253
SfaNI	GCATC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	3 cut(s)	66, 120, 127
StyI	CCWWGG	2 cut(s)	212, 257
TasI	AATT	1 cut(s)	142
TseI	GCWGC	7 cut(s)	18, 122, 160, 251, 275, 278, 281
TspDTI	ATGAA	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.