Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Forward (+)

21512472 .. 21512822

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGAGAGATTTTGGGGGAGGCGTTCAACTTGAGTCCCCAGGAACTAGCTAACCTTGATAATACAATTAGTGAGTTCATTGTTCATGGTAAATGGGAGCTTCCTGATATCTTTGTTCAGGTGTTTCCTGAGGTTGCAGAGGCCCTTACCTCCACTACACTTCCTTTAGAGCCAACAAAGGATCAGGTGGTTTGGTCTGGTTCTTCGTCTGGCGCTTTGACATCAAAGGAGGCTTACCTGGCCTTGGCTCCATCATCTCCTCCGTTAGCTTGGGGTTCTTTGCTATGGCATCCTGCAATTCAGCCGCGAAAGAGCATTTGTTTTGGAAGATTTTTCATAGGAGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

4.57

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	307
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	39, 237
AluBI	AGCT	3 cut(s)	50, 100, 269
AluI	AGCT	3 cut(s)	50, 100, 269
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	141, 240
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	129
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	41, 239
BfaI	CTAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	41, 239
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	41, 239
BmsI	GCATC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	39, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	41, 239
BseDI	CCNNGG	2 cut(s)	39, 243
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	143, 242
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	143, 242
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	143, 242
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	39, 243
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	41, 239
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	2 cut(s)	41, 239
BstSCI	CCNGG	2 cut(s)	39, 237
BstUI	CGCG	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	143, 242
BtsCI	GGATG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	9 cut(s)	50, 100, 143, 172, 233, 242, 248, 269, 304
CviKI_1	RGCY	9 cut(s)	50, 100, 143, 172, 233, 242, 248, 269, 304
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	39, 237
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	87, 286, 338
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	143, 242
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	2 cut(s)	104, 128
HpyCH4V	TGCA	2 cut(s)	137, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	97, 253
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	195, 339
MluCI	AATT	3 cut(s)	66, 297, 344
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	13, 124, 133, 160, 223, 270
MspR9I	CCNGG	2 cut(s)	41, 239
MvaI	CCWGG	2 cut(s)	41, 239
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	39, 237
PspGI	CCWGG	2 cut(s)	39, 237
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	41, 239
SetI	ASST	9 cut(s)	52, 57, 102, 123, 135, 152, 189, 240, 271
SfaNI	GCATC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	66, 297, 344
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	39, 237
StyI	CCWWGG	1 cut(s)	243
TasI	AATT	3 cut(s)	66, 297, 344
TauI	GCSGC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	67, 74, 325
TspGWI	ACGGA	1 cut(s)	252
XapI	RAATTY	1 cut(s)	344
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.