Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

23218198 .. 23219501

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1193600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTCAGGTGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTAGGTGCTCTGCTTGTGCCTTTCCTGCTGCCCGCAAGAGGAAGTACAACTGGAGTGAAAAGGCAATCCGAAGGAAGACGACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAAGGTACCGAAGCTGCACCAAGGAAGAAGGGAGCAGCCGCAACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

96

Amino Acids

10.76

Weight (kDa)

11.86

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	3.4e-27	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	3 cut(s)	127, 228, 276
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	71, 217
AfaI	GTAC	2 cut(s)	140, 244
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	2 cut(s)	78, 251
AluI	AGCT	2 cut(s)	78, 251
Alw21I	GWGCWC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	4 cut(s)	75, 122, 251, 272
Asp718I	GGTACC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	87, 109, 238, 284
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	54
BisI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
BlsI	GCNGC	6 cut(s)	77, 124, 230, 253, 274, 277
BmiI	GGNNCC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	149, 181, 187
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	149, 181, 187
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	87, 109, 238, 284
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	127, 228, 276
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	149, 181, 187
BssECI	CCNNGG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
BstV1I	GCAGC	4 cut(s)	87, 109, 238, 284
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	139, 243
CviJI	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviKI_1	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviQI	GTAC	2 cut(s)	139, 243
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	71, 217
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
GluI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	90, 164, 236
Hpy188III	TCNNGA	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	159, 180, 233, 259
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
KpnI	GGTACC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	46, 130, 132, 162, 168
Lsp1109I	GCAGC	4 cut(s)	87, 109, 238, 284
MbiI	CCGCTC	1 cut(s)	228
MboII	GAAGA	5 cut(s)	77, 103, 181, 191, 274
MhlI	GDGCHC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	24, 27, 62, 126, 186, 222
MseI	TTAA	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
NlaIV	GGNNCC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	77, 124, 230, 253, 274, 277
PspN4I	GGNNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	140, 244
RsaNI	GTAC	2 cut(s)	139, 243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	65, 80, 101, 197, 244, 253
SsiI	CCGC	3 cut(s)	127, 228, 276
StyI	CCWWGG	1 cut(s)	257
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	2 cut(s)	231, 278
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseI	GCWGC	4 cut(s)	75, 122, 251, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.