AT1G15385

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004345
Physical Location & Seq
Reverse (-)
5292712 .. 5293338
627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15385.1

Sequence Viewer

Length: 222 bp
ATGAACAACAACAAGAACATGAAGATGATGATGAGTTCCGCAAAAGAAAGTGGTAATGGTACCACTAATATTGTTATTAAAGAGACGATGAATAAGAAGGTGGAAAGGAAGGCATCGATGGACGTGGACAAGAGCGCAGAAGCTTTCATCACAAAGTTCAGAAATCAGCTTCTTCTCCAGCGTCTTGAATCCATTGAAAACATGCTCTCCAAAGGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

73

Amino Acids

8.28

Weight (kDa)

9.82

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 41 - 67 7.1e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 39
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 188, 197
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 2 cut(s) 143, 169
AluI AGCT 2 cut(s) 143, 169
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 214
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 59
BccI CCATC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
BseCI ATCGAT 1 cut(s) 116
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 216
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 216
BspDI ATCGAT 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BstHHI GCGC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 116
BtrI CACGTC 1 cut(s) 124
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 116
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 2 cut(s) 19, 202
CviJI RGCY 3 cut(s) 143, 169, 216
CviKI_1 RGCY 3 cut(s) 143, 169, 216
CviQI GTAC 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 22, 205
FaiI YATR 2 cut(s) 20, 203
FatI CATG 2 cut(s) 18, 201
GlaI GCGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 216
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 22, 205
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 91, 103
HpyCH4IV ACGT 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 22, 205
HspAI GCGC 1 cut(s) 135
KpnI GGTACC 1 cut(s) 63
LpnPI CCDG 1 cut(s) 191
LweI GCATC 1 cut(s) 122
MaeII ACGT 1 cut(s) 123
MboII GAAGA 2 cut(s) 34, 164
MseI TTAA 2 cut(s) 78, 220
MslI CAYNNNNRTG 1 cut(s) 23
NlaIII CATG 2 cut(s) 22, 205
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 205
PfeI GAWTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 78, 220
Sau96I GGNCC 1 cut(s) 215
SetI ASST 4 cut(s) 102, 126, 145, 171
SfaNI GCATC 1 cut(s) 122
SgeI CNNG 7 cut(s) 25, 31, 136, 142, 190, 197, 214
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 70
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 116
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 78, 220
Tru9I TTAA 2 cut(s) 78, 220
TspDTI ATGAA 4 cut(s) 17, 35, 104, 136
XceI RCATGY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.