FvH4_6g30170

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004345
Physical Location & Seq
Reverse (-)
23314954 .. 23316156
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30170.t1

Sequence Viewer

Length: 285 bp
ATGAAGAAGAGTTCCATGCCTCCTCATTCTCACTGCTCTCCCATTCTCGAAGAGCCTGAGAAGCAAAGCTTTAGGGTACTCGAGAAAGGACCTGCTGCAAGGTCTCATGCTCTGGATCAAACCAAAGAGGCAGCAGCCGCAGCACCGAAGAAGCTAGAGAGGAAGACAACCGAAGACATTAATGCAAGCGCCGATGCGTTCATCAAGAAGTTCAGGAAGCAGCTGATGATCCAAAGGCTGGAGTCGATCGAGAATTACGAGCAGATGCTAGCAAGGGGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

95

Amino Acids

10.63

Weight (kDa)

9.37

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 58 - 92 3e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 238
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 123, 223
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 238
AluBI AGCT 3 cut(s) 69, 154, 223
AluI AGCT 3 cut(s) 69, 154, 223
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 123, 223
Ama87I CYCGRG 1 cut(s) 80
ApeKI GCWGC 5 cut(s) 95, 131, 134, 140, 220
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 170, 180
BbvI GCAGC 5 cut(s) 82, 143, 146, 152, 232
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 155, 269
BfoI RGCGCY 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 6 cut(s) 96, 132, 135, 138, 141, 221
BlsI GCNGC 6 cut(s) 97, 133, 136, 139, 142, 222
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 89
BmsI GCATC 2 cut(s) 184, 255
BmtI GCTAGC 1 cut(s) 272
BpiI GAAGAC 2 cut(s) 170, 180
BpmI CTGGAG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 5 cut(s) 82, 143, 146, 152, 232
Bsh1285I CGRYCG 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 115, 228, 246
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 100
BspOI GCTAGC 1 cut(s) 272
BspPI GGATC 2 cut(s) 123, 223
BspQI GCTCTTC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 108
BssMI GATC 3 cut(s) 115, 228, 246
Bst6I CTCTTC 2 cut(s) 2, 45
BstC8I GCNNGC 2 cut(s) 187, 270
BstDEI CTNAG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 3 cut(s) 118, 231, 249
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 115, 228, 246
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 61, 137, 140
BstV1I GCAGC 5 cut(s) 82, 143, 146, 152, 232
BstV2I GAAGAC 2 cut(s) 170, 180
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 187, 270
CfoI GCGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 16, 107
CviJI RGCY 7 cut(s) 55, 69, 137, 154, 223, 238, 280
CviKI_1 RGCY 7 cut(s) 55, 69, 137, 154, 223, 238, 280
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 117, 230, 248
DpnII GATC 3 cut(s) 115, 228, 246
Eam1104I CTCTTC 2 cut(s) 2, 45
EarI CTCTTC 2 cut(s) 2, 45
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 2 cut(s) 19, 110
FaiI YATR 2 cut(s) 17, 108
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 2 cut(s) 15, 106
Fnu4HI GCNGC 6 cut(s) 96, 132, 135, 138, 141, 221
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 6 cut(s) 96, 132, 135, 138, 141, 221
FspBI CTAG 2 cut(s) 155, 269
GlaI GCGC 1 cut(s) 190
GluI GCNGC 6 cut(s) 96, 132, 135, 138, 141, 221
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 192
HhaI GCGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 19, 110
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 1 cut(s) 242
Hpy188III TCNNGA 6 cut(s) 47, 82, 113, 205, 214, 250
HpyCH4V TGCA 2 cut(s) 98, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 137, 140
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 19, 110
HspAI GCGC 1 cut(s) 189
Kzo9I GATC 3 cut(s) 115, 228, 246
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 69, 98, 105, 199, 224
Lsp1109I GCAGC 5 cut(s) 82, 143, 146, 152, 232
LweI GCATC 2 cut(s) 184, 255
MaeI CTAG 2 cut(s) 155, 269
MalI GATC 3 cut(s) 117, 230, 248
MboI GATC 3 cut(s) 115, 228, 246
MboII GAAGA 6 cut(s) 16, 19, 62, 160, 175, 185
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 30, 33, 121, 153
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 61, 137, 140
NdeII GATC 3 cut(s) 115, 228, 246
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 19, 110
PaeR7I CTCGAG 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 6 cut(s) 97, 133, 136, 139, 142, 222
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 89
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PvuI CGATCG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 6 cut(s) 96, 132, 135, 138, 141, 221
Sau3AI GATC 3 cut(s) 115, 228, 246
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 282
SetI ASST 5 cut(s) 71, 94, 104, 156, 225
SfaNI GCATC 2 cut(s) 184, 255
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 253
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 155, 269
TaqI TCGA 4 cut(s) 48, 81, 245, 249
TasI AATT 1 cut(s) 253
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 38
TseI GCWGC 5 cut(s) 95, 131, 134, 140, 220
TspDTI ATGAA 2 cut(s) 17, 190
TspRI CASTG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 80
XspI CTAG 2 cut(s) 155, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.