RLG00000036989

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004345
Physical Location & Seq
Forward (+)
87352230 .. 87354245
2016 bp
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UTR
Exon/CDS
Intron
RLM00000036989

Sequence Viewer

Length: 405 bp
ATGGCTTTGATTTGTGCTGTGAAATTGGGTTTGACGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAAAGAAAGAATCAACAACACAAAGGGATTTCGAGGCACATTTCTCTCCAACCCCCTCATTCAATCCAACATCAAGAAATCTTTGAGCTATCTTACCAAAGAGGCTGTCATGGATGCTCGTCGACAGGTTTCTGCGAGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATATCGATAATACAAAGAAACAGGCAATGAGCAGAAGGATGATGGCAGCGGATGAGCAAGGCGACATTAATGATATGGCTGATGCCTTCATCAAGAAGTTCAGGAACCAGCTAAAGATTCAAAGGGAAGAATCATTCAAAAGGTTTCAGGAAATGATTGCTCGTGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

10.45

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 97 - 132 5e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AciI CCGC 1 cut(s) 281
AgsI TTSAA 3 cut(s) 128, 353, 370
AluBI AGCT 2 cut(s) 153, 343
AluI AGCT 2 cut(s) 153, 343
ApeKI GCWGC 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AseI ATTAAT 1 cut(s) 300
BauI CACGAG 1 cut(s) 393
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 268
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 338
BmsI GCATC 2 cut(s) 169, 304
Bsa29I ATCGAT 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 3 cut(s) 184, 276, 289
BseMI GCAATG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 237
BspACI CCGC 1 cut(s) 281
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 264
BssSI CACGAG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 184, 276, 289
BstV1I GCAGC 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 3 cut(s) 184, 276, 289
ClaI ATCGAT 1 cut(s) 237
CviAII CATG 1 cut(s) 175
CviJI RGCY 6 cut(s) 5, 153, 170, 210, 311, 343
CviKI_1 RGCY 6 cut(s) 5, 153, 170, 210, 311, 343
Eco32I GATATC 1 cut(s) 235
EcoRV GATATC 1 cut(s) 235
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 308
FatI CATG 1 cut(s) 174
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 3 cut(s) 191, 283, 296
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 3 cut(s) 75, 349, 362
Hpy166II GTNNAC 1 cut(s) 188
Hpy188III TCNNGA 4 cut(s) 139, 325, 334, 380
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 217, 261, 328
HpyCH4V TGCA 1 cut(s) 220
Hsp92II CATG 1 cut(s) 178
LpnPI CCDG 5 cut(s) 176, 239, 319, 353, 365
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 169, 304
MboII GAAGA 9 cut(s) 49, 52, 55, 58, 61, 70, 73, 76, 371
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 138, 156
MnlI CCTC 3 cut(s) 92, 131, 160
MseI TTAA 2 cut(s) 300, 403
MspA1I CMGCKG 1 cut(s) 281
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 338
PfeI GAWTC 3 cut(s) 75, 349, 362
PkrI GCNGC 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 338
SalI GTCGAC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 300, 403
SatI GCNGC 1 cut(s) 279
SetI ASST 4 cut(s) 155, 195, 345, 377
SfaNI GCATC 2 cut(s) 169, 304
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 281
TaqI TCGA 3 cut(s) 97, 187, 237
TasI AATT 1 cut(s) 23
TfiI GAWTC 3 cut(s) 75, 349, 362
Tru1I TTAA 2 cut(s) 300, 403
Tru9I TTAA 2 cut(s) 300, 403
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 310
VspI ATTAAT 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.