Rh2CG367100

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004345
Physical Location & Seq
Forward (+)
49989664 .. 49990035
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG367100.1

Sequence Viewer

Length: 372 bp
ATGGAAGCAAAGGAGCTCAGAAAGGCACCATCTATTGTTAATTTCAGAAAAGAAAAAAAAACAGAAGCTGCAACAATGAAGAAGAGCTCCATGCCTCCTCATCCTTTCTACTCTCCCATTCTCGAAGAGCCTGAGAAACAAGACGCCAAAAGCTTTAGGGTACTCGAGAAAGGACCTGCTGCAAGGTCTCATGCTGATCTGGATCAAAACAAAGAGGCAGCAGCTGCAGCACCGAAGAAGCTAGAGAGGAAGACAACCGAAGACATCAATGAAAGCGCTGATGCATTCATCAAGAAGTTCAGAAAGCAGCTGATGATCCAAAGGCTAGAGTCGATCGAGAATTACGAGCAAATGCTAGCAAGGGGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

9.42

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 87 - 121 1.1e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 25
AclWI GGATC 2 cut(s) 210, 310
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 162
AfeI AGCGCT 1 cut(s) 277
AluBI AGCT 7 cut(s) 16, 68, 87, 153, 224, 241, 310
AluI AGCT 7 cut(s) 16, 68, 87, 153, 224, 241, 310
Alw21I GWGCWC 2 cut(s) 18, 89
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 210, 310
AlwNI CAGNNNCTG 2 cut(s) 68, 224
Ama87I CYCGRG 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 277
ApeKI GCWGC 7 cut(s) 68, 179, 218, 221, 224, 227, 307
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 173
AsuNHI GCTAGC 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 3 cut(s) 18, 89, 369
BbsI GAAGAC 2 cut(s) 257, 267
Bbv12I GWGCWC 2 cut(s) 18, 89
BbvI GCAGC 7 cut(s) 55, 166, 211, 230, 233, 239, 319
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 242, 326, 356
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 7 cut(s) 69, 180, 219, 222, 225, 228, 308
BlsI GCNGC 7 cut(s) 70, 181, 220, 223, 226, 229, 309
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 271
BmtI GCTAGC 1 cut(s) 359
BpiI GAAGAC 2 cut(s) 257, 267
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 201
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 201
BseMII CTCAG 2 cut(s) 31, 123
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 7 cut(s) 55, 166, 211, 230, 233, 239, 319
Bsh1285I CGRYCG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 18, 89
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 18, 89, 369
Bsp143I GATC 4 cut(s) 196, 202, 315, 333
BspCNI CTCAG 2 cut(s) 30, 124
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 210, 310
BspQI GCTCTTC 2 cut(s) 77, 120
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 192
BssMI GATC 4 cut(s) 196, 202, 315, 333
BssNI GRCGYC 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 77, 120
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 17, 132
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 4 cut(s) 199, 205, 318, 336
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 196, 202, 315, 333
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 2 cut(s) 224, 227
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 7 cut(s) 55, 166, 211, 230, 233, 239, 319
BstV2I GAAGAC 2 cut(s) 257, 267
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 357
CaiI CAGNNNCTG 2 cut(s) 68, 224
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 91, 191
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 17, 132
DpnI GATC 4 cut(s) 198, 204, 317, 335
DpnII GATC 4 cut(s) 196, 202, 315, 333
Eam1104I CTCTTC 2 cut(s) 77, 120
EarI CTCTTC 2 cut(s) 77, 120
Ecl136II GAGCTC 2 cut(s) 16, 87
Eco24I GRGCYC 3 cut(s) 18, 89, 369
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 173
Eco47III AGCGCT 1 cut(s) 277
Eco53kI GAGCTC 2 cut(s) 16, 87
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 2 cut(s) 16, 87
EcoO109I RGGNCCY 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 3 cut(s) 18, 89, 369
FaeI CATG 2 cut(s) 94, 194
FaiI YATR 2 cut(s) 92, 192
FatI CATG 2 cut(s) 90, 190
Fnu4HI GCNGC 7 cut(s) 69, 180, 219, 222, 225, 228, 308
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 3 cut(s) 18, 89, 369
Fsp4HI GCNGC 7 cut(s) 69, 180, 219, 222, 225, 228, 308
FspBI CTAG 3 cut(s) 242, 326, 356
GlaI GCGC 1 cut(s) 277
GluI GCNGC 7 cut(s) 69, 180, 219, 222, 225, 228, 308
HaeII RGCGCY 1 cut(s) 279
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 94, 194
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 20, 47, 302
Hpy188III TCNNGA 5 cut(s) 122, 166, 200, 292, 337
HpyCH4V TGCA 4 cut(s) 71, 182, 227, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 227
HpyF3I CTNAG 2 cut(s) 17, 132
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 94, 194
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 4 cut(s) 196, 202, 315, 333
LguI GCTCTTC 2 cut(s) 77, 120
LmnI GCTCC 2 cut(s) 13, 92
LpnPI CCDG 3 cut(s) 144, 185, 189
Lsp1109I GCAGC 7 cut(s) 55, 166, 211, 230, 233, 239, 319
LweI GCATC 1 cut(s) 271
MaeI CTAG 3 cut(s) 242, 326, 356
MalI GATC 4 cut(s) 198, 204, 317, 335
MboI GATC 4 cut(s) 196, 202, 315, 333
MboII GAAGA 6 cut(s) 91, 94, 137, 247, 262, 272
MhlI GDGCHC 3 cut(s) 18, 89, 369
MluCI AATT 2 cut(s) 40, 340
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 105, 108, 208, 240
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 2 cut(s) 224, 310
Mva1269I GAATGC 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 224, 227
NdeII GATC 4 cut(s) 196, 202, 315, 333
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 94, 194
NlaIV GGNNCC 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 164
PciSI GCTCTTC 2 cut(s) 77, 120
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 1 cut(s) 284
PkrI GCNGC 7 cut(s) 70, 181, 220, 223, 226, 229, 309
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 173
Psp124BI GAGCTC 2 cut(s) 18, 89
Psp5II RGGWCCY 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 1 cut(s) 229
PstNI CAGNNNCTG 2 cut(s) 68, 224
PvuI CGATCG 1 cut(s) 336
PvuII CAGCTG 2 cut(s) 224, 310
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SacI GAGCTC 2 cut(s) 18, 89
SapI GCTCTTC 2 cut(s) 77, 120
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 7 cut(s) 69, 180, 219, 222, 225, 228, 308
Sau3AI GATC 4 cut(s) 196, 202, 315, 333
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 3 cut(s) 18, 89, 369
SetI ASST 9 cut(s) 18, 70, 89, 155, 178, 188, 226, 243, 312
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 40, 340
SspMI CTAG 3 cut(s) 242, 326, 356
SstI GAGCTC 2 cut(s) 18, 89
TaqI TCGA 4 cut(s) 123, 165, 332, 336
TasI AATT 2 cut(s) 40, 340
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 7 cut(s) 68, 179, 218, 221, 224, 227, 307
TspDTI ATGAA 3 cut(s) 92, 277, 285
VpaK11BI GGWCC 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 3 cut(s) 242, 326, 356
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.