MD17G1207500.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004345
Physical Location & Seq
Forward (+)
25021809 .. 25022096
288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1207500.v1.1.491

Sequence Viewer

Length: 288 bp
ATGAAGAAGAGCTCCATGCCTCCTCATCCATACCACTCTCCCCTAAATGCAGGTGATCAGAAAGAAGAAGCGAAAAGCTTTCGAGTCGATCAGAAAACTGGAGCTTCAAGGTCTCATGCTATGGCGAACAATAAAGAGGAAACGGGACCAAAGAAGCTAGAGAGGAAGTCGACTGAAGATATCAACGAAAGCGCAGAGGCATTCATCAAGAAGTTCAGGAAGCAGCTTTTGATCCAAAGGCTCGAGTCCATTGAGAATTACGAGCAAATGCTTGCAAGGGGACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

96

Amino Acids

10.89

Weight (kDa)

9.43

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 59 - 93 1.2e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 170
AclWI GGATC 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 108
AluBI AGCT 5 cut(s) 12, 78, 104, 157, 226
AluI AGCT 5 cut(s) 12, 78, 104, 157, 226
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 235
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 55, 88, 231
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 226
BspQI GCTCTTC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 103
BssMI GATC 3 cut(s) 55, 88, 231
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 58, 91, 234
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 55, 88, 231
BstV1I GCAGC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 16, 116
CviJI RGCY 6 cut(s) 12, 78, 104, 157, 226, 241
CviKI_1 RGCY 6 cut(s) 12, 78, 104, 157, 226, 241
DpnI GATC 3 cut(s) 57, 90, 233
DpnII GATC 3 cut(s) 55, 88, 231
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 12
EcoRV GATATC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 14
FaeI CATG 2 cut(s) 19, 119
FaiI YATR 4 cut(s) 17, 31, 117, 122
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 15, 115
FbaI TGATCA 1 cut(s) 55
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 120
HhaI GCGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 19, 119
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 3 cut(s) 84, 245, 282
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 60, 93
Hpy188III TCNNGA 2 cut(s) 208, 217
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 50, 275
Hsp92II CATG 2 cut(s) 19, 119
HspAI GCGC 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 88, 231
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 2 cut(s) 17, 101
LpnPI CCDG 3 cut(s) 36, 84, 202
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 158
MalI GATC 3 cut(s) 57, 90, 233
MboI GATC 3 cut(s) 55, 88, 231
MboII GAAGA 4 cut(s) 16, 19, 77, 188
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 256
MlyI GAGTC 3 cut(s) 93, 254, 276
MnlI CCTC 5 cut(s) 30, 33, 130, 156, 190
Mva1269I GAATGC 1 cut(s) 200
NdeII GATC 3 cut(s) 55, 88, 231
NlaIII CATG 2 cut(s) 19, 119
NlaIV GGNNCC 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 2
PctI GAATGC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 3 cut(s) 92, 253, 276
PpsI GAGTC 3 cut(s) 92, 253, 276
Psp124BI GAGCTC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 242
SacI GAGCTC 1 cut(s) 14
SalI GTCGAC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 3 cut(s) 55, 88, 231
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 3 cut(s) 93, 254, 276
SduI GDGCHC 1 cut(s) 14
SetI ASST 7 cut(s) 14, 55, 80, 106, 113, 159, 228
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 14
TaqI TCGA 4 cut(s) 82, 87, 170, 243
TasI AATT 1 cut(s) 256
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 17, 193
VpaK11BI GGWCC 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.