Rmu_sc0011683.1_g000002

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011683.1
OG0004345
Physical Location & Seq
Forward (+)
4797 .. 6021
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011683.1_g000002.1.cds

Sequence Viewer

Length: 423 bp
atgcatactgtaaatgcttcctcaggccttagcggtgtaacccggtgttccagaaactttcgttattgggttagccatacagtttacatgtttctagcgacaacacagggatttcgaggcacatttctctccaaccccctcattcaatccaacatcaagaaatctttgagctatcttaccaaagtggctgtcatggatgctcgtcgagaggtagctgcgagtggaagccaacgagtgcagaaggaaaaggatatcgataatacaaagaaacaggcaatgagcagaaggatgatggcagcggatgagcaaggcgacattaatgatatggctgatgccttcatcaagaagttcaggaagcagctaaagattcaaagggaagaatcattcaaaaggtttcaggaaatgattgctcgtggggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

140

Amino Acids

16.05

Weight (kDa)

10.28

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 299
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 146, 371, 388
AluBI AGCT 3 cut(s) 171, 215, 361
AluI AGCT 3 cut(s) 171, 215, 361
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 215, 296, 358
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AseI ATTAAT 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 22
BauI CACGAG 1 cut(s) 411
BbvI GCAGC 3 cut(s) 202, 308, 370
BccI CCATC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 216, 297, 359
BlsI GCNGC 3 cut(s) 217, 298, 360
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 187, 322
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 3 cut(s) 202, 294, 307
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 202, 308, 370
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 43
BsnI GGCC 1 cut(s) 27
BspACI CCGC 2 cut(s) 33, 299
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 282
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 10, 82
BstDEI CTNAG 2 cut(s) 22, 29
BstF5I GGATG 3 cut(s) 202, 294, 307
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 202, 308, 370
Bsu15I ATCGAT 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 3 cut(s) 202, 294, 307
ClaI ATCGAT 1 cut(s) 255
CviAII CATG 2 cut(s) 88, 193
CviJI RGCY 8 cut(s) 27, 75, 171, 188, 215, 228, 329, 361
CviKI_1 RGCY 8 cut(s) 27, 75, 171, 188, 215, 228, 329, 361
DdeI CTNAG 2 cut(s) 22, 29
Eco147I AGGCCT 1 cut(s) 27
Eco32I GATATC 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 91, 196
FaiI YATR 5 cut(s) 6, 78, 89, 194, 326
FatI CATG 2 cut(s) 87, 192
Fnu4HI GCNGC 3 cut(s) 216, 297, 359
FokI GGATG 3 cut(s) 209, 301, 314
Fsp4HI GCNGC 3 cut(s) 216, 297, 359
FspBI CTAG 1 cut(s) 95
GluI GCNGC 3 cut(s) 216, 297, 359
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 91, 196
HinfI GANTC 2 cut(s) 367, 380
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 6 cut(s) 51, 157, 206, 343, 352, 398
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 235, 279, 346
HpyCH4III ACNGT 2 cut(s) 10, 82
HpyCH4V TGCA 2 cut(s) 4, 238
HpyF3I CTNAG 2 cut(s) 22, 29
Hsp92II CATG 2 cut(s) 91, 196
LpnPI CCDG 7 cut(s) 9, 56, 64, 92, 257, 337, 383
Lsp1109I GCAGC 3 cut(s) 202, 308, 370
LweI GCATC 2 cut(s) 187, 322
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 156, 174
MnlI CCTC 4 cut(s) 31, 110, 149, 202
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 318, 421
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
NciI CCSGG 1 cut(s) 43
NlaIII CATG 2 cut(s) 91, 196
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 91
PceI AGGCCT 1 cut(s) 27
PciI ACATGT 1 cut(s) 87
PfeI GAWTC 2 cut(s) 367, 380
PkrI GCNGC 3 cut(s) 217, 298, 360
PscI ACATGT 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 318
SaqAI TTAA 2 cut(s) 318, 421
SatI GCNGC 3 cut(s) 216, 297, 359
ScrFI CCNGG 1 cut(s) 43
SetI ASST 5 cut(s) 173, 213, 217, 363, 395
SfaNI GCATC 2 cut(s) 187, 322
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 2 cut(s) 33, 299
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 10, 82
TaqI TCGA 3 cut(s) 115, 205, 255
TfiI GAWTC 2 cut(s) 367, 380
Tru1I TTAA 2 cut(s) 318, 421
Tru9I TTAA 2 cut(s) 318, 421
TseI GCWGC 3 cut(s) 215, 296, 358
TspDTI ATGAA 1 cut(s) 328
VspI ATTAAT 1 cut(s) 318
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.