Rh5AG530100

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004345
Physical Location & Seq
Forward (+)
91145360 .. 91221284
75925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG530100.1

Sequence Viewer

Length: 474 bp
ATGTCTGCTAGGCGTCCAAGTAAGAGTCGACGTTATCATGGACCAGCTCGTATTCGCTCTACATCTCCTCCAGATGGCAATGAAATTACTCCATTGAATGCCTTAATGCATACTAGGTATTGGTGCTATAAATACATCATTGAGAACGTTGTAGACAACACAAAGGGATTTCGAGGCACATTTCTCTCCAACCCCCTCATTCAATCCAACATCAAGAAATCTTTGAGCTATCTTACCAAAGCGGCTGTCATGGATGCTCGTCCAGAGGTTTCTGCGAGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATAATACAAAGAAACAGGCAATAAGCAGAAGGATGATGGCAGCGGATGAGCAAGGCGACATTAATGATATGGCTGATGCCTTCATCAAGAAGTTCAGGAACCAGCTAAAGATTCAAAGGGAAGAATCGTTCAAAAGGTTTCAGGAAATGATTGCTCGTGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

10.21

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 120 - 155 6.6e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 28, 153
AciI CCGC 2 cut(s) 242, 350
AclI AACGTT 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 4 cut(s) 97, 203, 422, 439
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 47, 228, 412
AluI AGCT 3 cut(s) 47, 228, 412
ApeKI GCWGC 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 462
BbvI GCAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 68, 337
BfaI CTAG 2 cut(s) 9, 114
BisI GCNGC 2 cut(s) 243, 348
BlsI GCNGC 2 cut(s) 244, 349
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 407
BmsI GCATC 2 cut(s) 244, 373
BpmI CTGGAG 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 85
BseGI GGATG 3 cut(s) 259, 345, 358
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 74
BsmI GAATGC 1 cut(s) 103
BspACI CCGC 2 cut(s) 242, 350
BspLI GGNNCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 13
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 13
BstF5I GGATG 3 cut(s) 259, 345, 358
BstV1I GCAGC 1 cut(s) 359
BtsCI GGATG 3 cut(s) 259, 345, 358
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 2
CviAII CATG 2 cut(s) 38, 250
CviJI RGCY 6 cut(s) 47, 228, 245, 285, 380, 412
CviKI_1 RGCY 6 cut(s) 47, 228, 245, 285, 380, 412
Eco47I GGWCC 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 111
FaeI CATG 2 cut(s) 41, 253
FaiI YATR 5 cut(s) 39, 111, 129, 251, 377
FatI CATG 2 cut(s) 37, 249
FblI GTMKAC 2 cut(s) 28, 153
Fnu4HI GCNGC 2 cut(s) 243, 348
FokI GGATG 3 cut(s) 266, 352, 365
Fsp4HI GCNGC 2 cut(s) 243, 348
FspBI CTAG 2 cut(s) 9, 114
GluI GCNGC 2 cut(s) 243, 348
GsuI CTGGAG 1 cut(s) 54
HgaI GACGC 1 cut(s) 2
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 2 cut(s) 41, 253
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 3 cut(s) 25, 418, 431
Hpy166II GTNNAC 2 cut(s) 29, 154
Hpy188III TCNNGA 6 cut(s) 71, 214, 263, 394, 403, 449
Hpy8I GTNNAC 2 cut(s) 29, 154
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 292, 330, 397
HpyCH4IV ACGT 2 cut(s) 31, 147
HpyCH4V TGCA 2 cut(s) 109, 295
HpySE526I ACGT 2 cut(s) 31, 147
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 2 cut(s) 41, 253
LpnPI CCDG 7 cut(s) 57, 84, 276, 308, 388, 422, 434
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 2 cut(s) 244, 373
MaeI CTAG 2 cut(s) 9, 114
MaeII ACGT 2 cut(s) 31, 147
MboII GAAGA 1 cut(s) 440
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 213, 231
MnlI CCTC 4 cut(s) 78, 167, 206, 259
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 3 cut(s) 104, 369, 472
MspA1I CMGCKG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 41, 253
NlaIV GGNNCC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 111
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 418, 431
PkrI GCNGC 2 cut(s) 244, 349
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshBI ATTAAT 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 104, 369, 472
SatI GCNGC 2 cut(s) 243, 348
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 34
SetI ASST 8 cut(s) 34, 49, 119, 150, 230, 270, 414, 446
SfaNI GCATC 2 cut(s) 244, 373
SinI GGWCC 1 cut(s) 41
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 242, 350
SspMI CTAG 2 cut(s) 9, 114
TaiI ACGT 2 cut(s) 34, 150
TaqI TCGA 2 cut(s) 28, 172
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 418, 431
Tru1I TTAA 3 cut(s) 104, 369, 472
Tru9I TTAA 3 cut(s) 104, 369, 472
TseI GCWGC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 96, 379
VpaK11BI GGWCC 1 cut(s) 41
VspI ATTAAT 1 cut(s) 369
XmiI GTMKAC 2 cut(s) 28, 153
XspI CTAG 2 cut(s) 9, 114
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.