pycom03g00790

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004345
Physical Location & Seq
Reverse (-)
618296 .. 618705
410 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00790.1

Sequence Viewer

Length: 327 bp
ATGAAACTCATACACGTTTCTCTTCAATCCCTTGCCGAATCCGACATCAAAATTACCCTTTTGGTTACTGAACTTTCCGAGCAAGCTGCTGCGATGGATGCTCGTCAAGAGGTTGCGGCTGCCGACGGGAGCCAAAGGATGCAGAAGGAAAAGGAGAATACAATGAAGAAACAAATGGTGAACCGGAGGATGAATGCGGTGGATGATCAGGAAGGCGACGTCAATGAAATGGCTGATGCCTTCATCAAAAAGTTCAGAAACCAGCTCAAGATTCAAAGGGAAGAGTCGTTCAAACGGTTTCAGGAAATGCTTGCTCGTGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

6.6

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 72 - 106 4.6e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AciI CCGC 2 cut(s) 116, 197
AcyI GRCGYC 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 3 cut(s) 26, 275, 292
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 86, 265
AluI AGCT 2 cut(s) 86, 265
ApeKI GCWGC 3 cut(s) 86, 89, 119
AsuHPI GGTGA 1 cut(s) 190
BauI CACGAG 1 cut(s) 315
BbvI GCAGC 3 cut(s) 73, 76, 106
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BclI TGATCA 1 cut(s) 205
BisI GCNGC 4 cut(s) 87, 90, 117, 120
BlsI GCNGC 4 cut(s) 88, 91, 118, 121
BmiI GGNNCC 1 cut(s) 131
BmsI GCATC 3 cut(s) 88, 129, 226
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 183
BseGI GGATG 4 cut(s) 103, 144, 195, 208
BseXI GCAGC 3 cut(s) 73, 76, 106
BsiSI CCGG 1 cut(s) 184
BsmI GAATGC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 2 cut(s) 116, 197
BspLI GGNNCC 1 cut(s) 131
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 2 cut(s) 27, 276
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 84, 312
BstF5I GGATG 4 cut(s) 103, 144, 195, 208
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 73, 76, 106
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 4 cut(s) 103, 144, 195, 208
Cac8I GCNNGC 2 cut(s) 84, 312
CviJI RGCY 5 cut(s) 86, 119, 132, 233, 265
CviKI_1 RGCY 5 cut(s) 86, 119, 132, 233, 265
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 27, 276
EarI CTCTTC 2 cut(s) 27, 276
FaiI YATR 1 cut(s) 11
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 87, 90, 117, 120
FokI GGATG 4 cut(s) 110, 151, 202, 215
Fsp4HI GCNGC 4 cut(s) 87, 90, 117, 120
GluI GCNGC 4 cut(s) 87, 90, 117, 120
HapII CCGG 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 219
HinfI GANTC 3 cut(s) 38, 271, 284
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 43, 79, 257
Hpy188III TCNNGA 4 cut(s) 107, 209, 268, 302
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 128, 221
HpyAV CCTTC 3 cut(s) 139, 206, 250
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 2 cut(s) 15, 219
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 2 cut(s) 15, 219
Hsp92I GRCGYC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 194, 197, 275, 287
Lsp1109I GCAGC 3 cut(s) 73, 76, 106
LweI GCATC 3 cut(s) 88, 129, 226
MaeII ACGT 2 cut(s) 15, 219
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 14, 178, 293
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 2 cut(s) 103, 180
MspI CCGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 131
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 38, 271
PkrI GCNGC 4 cut(s) 88, 91, 118, 121
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 131
SatI GCNGC 4 cut(s) 87, 90, 117, 120
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 1 cut(s) 293
SetI ASST 5 cut(s) 18, 88, 114, 222, 267
SfaNI GCATC 3 cut(s) 88, 129, 226
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 51
SsiI CCGC 2 cut(s) 116, 197
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 2 cut(s) 18, 222
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 38, 271
TseI GCWGC 3 cut(s) 86, 89, 119
TspDTI ATGAA 5 cut(s) 17, 179, 206, 232, 240
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.