Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001998.1

Orthogroup ID

OG0004345

Physical Location & Seq

Genomic Coordinates Reverse (-)

43596 .. 43892

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001998.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgaagaagagctccatgcctcctcatcctttctactctcccattctcgaagagcctgagaaacaagacgccaaaagctttagggtactcgagaaaggacctgctgcaaggtctcatgctaatctggatcaaaacaaagaggcagcagctgcagcaccgaagaagctagagaggaagacaaccgaagacatcaatgaaagcgctgatgcattcatcaagaagttcagaaagcagctgatgatccaaaggctagagtcgatcgagaattacgagcaaatgctagcaagggggctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

9.22

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15385
fragaria_vesca	FvH4_3g45180 FvH4_3g45190 FvH4_6g30170
malus_domestica	MD17G1207500.v1.1
prunus_persica	Prupe.3G082000_v2.0.a1 Prupe.6G009300_v2.0.a1
pyrus_communis	pycom03g00790 pycom17g21010
rosa_chinensis	RchiOBHm_Chr2g0136401
rosa_laevigata	RLG00000019528 RLG00000036989
rosa_multiflora	Rmu_sc0001381.1_g000022 Rmu_sc0001381.1_g000023 Rmu_sc0001998.1_g000013 Rmu_sc0011683.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001650 Rroxscaffold_2G00108320
rosa_rugosa	Rorug02G0329900 Rorug03G0305500.1 Rorug05G0477900 Rorug05G0479800
rosa_samantha	Rh2AG381100 Rh2BG387900 Rh2CG367100 Rh2DG404300 Rh5AG530100 Rh5BG557000 Rh5CG579800
rosa_wichuraiana	Rw5G049510 Rw5G049520 Rw5G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AclWI	GGATC	2 cut(s)	135, 235
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	202
AluBI	AGCT	5 cut(s)	12, 78, 149, 166, 235
AluI	AGCT	5 cut(s)	12, 78, 149, 166, 235
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	135, 235
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	202
ApeKI	GCWGC	6 cut(s)	104, 143, 146, 149, 152, 232
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	14, 294
BbsI	GAAGAC	2 cut(s)	182, 192
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	6 cut(s)	91, 136, 155, 158, 164, 244
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	167, 251, 281
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	6 cut(s)	105, 144, 147, 150, 153, 233
BlsI	GCNGC	6 cut(s)	106, 145, 148, 151, 154, 234
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	284
BpiI	GAAGAC	2 cut(s)	182, 192
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	117
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	6 cut(s)	91, 136, 155, 158, 164, 244
Bsh1285I	CGRYCG	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	14, 294
Bsp143I	GATC	3 cut(s)	127, 240, 258
BspCNI	CTCAG	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	109
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	135, 235
BspQI	GCTCTTC	2 cut(s)	2, 45
BspTNI	GGTCTC	1 cut(s)	117
BssMI	GATC	3 cut(s)	127, 240, 258
BssNI	GRCGYC	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	2, 45
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	130, 243, 261
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	127, 240, 258
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 152
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	6 cut(s)	91, 136, 155, 158, 164, 244
BstV2I	GAAGAC	2 cut(s)	182, 192
BtsCI	GGATG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	16, 116
CviJI	RGCY	8 cut(s)	12, 55, 78, 149, 166, 235, 250, 292
CviKI_1	RGCY	8 cut(s)	12, 55, 78, 149, 166, 235, 250, 292
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	3 cut(s)	129, 242, 260
DpnII	GATC	3 cut(s)	127, 240, 258
Eam1104I	CTCTTC	2 cut(s)	2, 45
EarI	CTCTTC	2 cut(s)	2, 45
Ecl136II	GAGCTC	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	14, 294
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	2 cut(s)	14, 294
FaeI	CATG	2 cut(s)	19, 119
FaiI	YATR	2 cut(s)	17, 117
FatI	CATG	2 cut(s)	15, 115
Fnu4HI	GCNGC	6 cut(s)	105, 144, 147, 150, 153, 233
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	2 cut(s)	14, 294
Fsp4HI	GCNGC	6 cut(s)	105, 144, 147, 150, 153, 233
FspBI	CTAG	3 cut(s)	167, 251, 281
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	6 cut(s)	105, 144, 147, 150, 153, 233
HaeII	RGCGCY	1 cut(s)	204
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	19, 119
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	5 cut(s)	47, 91, 125, 217, 262
HpyCH4V	TGCA	3 cut(s)	107, 152, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 152
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	19, 119
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	127, 240, 258
LguI	GCTCTTC	2 cut(s)	2, 45
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	69, 110, 114
Lsp1109I	GCAGC	6 cut(s)	91, 136, 155, 158, 164, 244
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	167, 251, 281
MalI	GATC	3 cut(s)	129, 242, 260
MboI	GATC	3 cut(s)	127, 240, 258
MboII	GAAGA	6 cut(s)	16, 19, 62, 172, 187, 197
MhlI	GDGCHC	2 cut(s)	14, 294
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	30, 33, 133, 165
Mph1103I	ATGCAT	1 cut(s)	211
MspA1I	CMGCKG	2 cut(s)	149, 235
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	149, 152
NdeII	GATC	3 cut(s)	127, 240, 258
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	19, 119
NsiI	ATGCAT	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	89
PciSI	GCTCTTC	2 cut(s)	2, 45
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	106, 145, 148, 151, 154, 234
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	261
PvuII	CAGCTG	2 cut(s)	149, 235
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	14
SapI	GCTCTTC	2 cut(s)	2, 45
SatI	GCNGC	6 cut(s)	105, 144, 147, 150, 153, 233
Sau3AI	GATC	3 cut(s)	127, 240, 258
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	14, 294
SetI	ASST	7 cut(s)	14, 80, 103, 113, 151, 168, 237
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	167, 251, 281
SstI	GAGCTC	1 cut(s)	14
TaqI	TCGA	4 cut(s)	48, 90, 257, 261
TasI	AATT	1 cut(s)	265
TseI	GCWGC	6 cut(s)	104, 143, 146, 149, 152, 232
TspDTI	ATGAA	3 cut(s)	17, 202, 210
VpaK11BI	GGWCC	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	3 cut(s)	167, 251, 281
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.