Rroxscaffold_1G00001650

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004345
Physical Location & Seq
Reverse (-)
1931984 .. 1932208
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001650.1

Sequence Viewer

Length: 225 bp
ATGGATGCTCATCGAGAGGTTGCTGCGAGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATAATACAAAGAAACAGGCAATGAGCAGAAGGATGATGGCAGCGGATGAGCAAGGCGACATTAATGACATGGCTGATGCCTTCATCAAGAAGTTCCGGAACCAGCTAAAGATTCAAAGGGAAGAATCATTCAAAAGGTTTCAGGAAATGACTGCTCGTGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

9.77

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 37 - 72 2.4e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 1 cut(s) 101
AgsI TTSAA 2 cut(s) 173, 190
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 23, 98
AseI ATTAAT 1 cut(s) 120
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 2 cut(s) 10, 110
BccI CCATC 1 cut(s) 88
BisI GCNGC 2 cut(s) 24, 99
BlsI GCNGC 2 cut(s) 25, 100
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 153
BseGI GGATG 3 cut(s) 10, 96, 109
BseJI GATNNNNATC 1 cut(s) 9
BseMI GCAATG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 10, 110
BsgI GTGCAG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 153
BspACI CCGC 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 84
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 10, 96, 109
BstV1I GCAGC 2 cut(s) 10, 110
BtsCI GGATG 3 cut(s) 10, 96, 109
CviAII CATG 1 cut(s) 127
CviJI RGCY 3 cut(s) 36, 131, 163
CviKI_1 RGCY 3 cut(s) 36, 131, 163
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 24, 99
FokI GGATG 3 cut(s) 17, 103, 116
Fsp4HI GCNGC 2 cut(s) 24, 99
GluI GCNGC 2 cut(s) 24, 99
HapII CCGG 1 cut(s) 154
Hin1II CATG 1 cut(s) 130
HinfI GANTC 2 cut(s) 169, 182
HpaII CCGG 1 cut(s) 154
Hpy188III TCNNGA 4 cut(s) 14, 145, 154, 200
HpyAV CCTTC 3 cut(s) 43, 81, 148
HpyCH4V TGCA 1 cut(s) 46
Hsp92II CATG 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 153
LpnPI CCDG 4 cut(s) 59, 167, 173, 185
Lsp1109I GCAGC 2 cut(s) 10, 110
LweI GCATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 191
MnlI CCTC 1 cut(s) 10
MroI TCCGGA 1 cut(s) 153
MseI TTAA 2 cut(s) 120, 223
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 154
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 169, 182
PkrI GCNGC 2 cut(s) 25, 100
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 120, 223
SatI GCNGC 2 cut(s) 24, 99
SetI ASST 3 cut(s) 21, 165, 197
SfaNI GCATC 1 cut(s) 124
SsiI CCGC 1 cut(s) 101
TaqI TCGA 1 cut(s) 13
TfiI GAWTC 2 cut(s) 169, 182
Tru1I TTAA 2 cut(s) 120, 223
Tru9I TTAA 2 cut(s) 120, 223
TseI GCWGC 2 cut(s) 23, 98
TspDTI ATGAA 1 cut(s) 130
VspI ATTAAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.