Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004345

Physical Location & Seq

Genomic Coordinates Forward (+)

40622061 .. 40623576

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAAGGCTAAACAGCTTTAGACACCTTAACCAAAAATGGTCAAATGGAGAGCATTCCAACGACCTACTTCATGCTCAAGCCCACATCTGGAACCACATCTTCAGCTTCATAAACTCCATGTCCCTCAAATCTGCAATTCAACTAGGTATACCAGATATCATCAACAAACATGGCTACCCCATGACTCTTTCTGAGCTCACATCTGCACTACCAATCCACCCAACCAAATCCCACAGCGTCTACCGCCTCATGCGAATATTGGTGCACTCTGGCTTCTTTGCTAAGAAAAAGCTGAGTAAAACTGATGAGGAAGGTTATACCCTTACTGATGCTTCCCAGCTCCTTCTGAAGGATCATCCCTTAAGCCTAACGCCCTTCTTAACTGCCATGCTCGATCCTGTTTTGACCAAACCATGGAATTACTTGAGCACTTGGTTCCAAAATGATGACCCTACGCCATTTGACACAGCACATGGGATGACATTTTGGGATTACGGGAACCATCAGCCAAGTATTGCCCATTTCTTCAACGATGCCATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCATCGATGATTGCAAAGGAGTGTTTGAGGGATTAGAGTCATTGGTTGATGTTGGAGGTGGTACAGGAACTGTGGCAAAGGCCATTGCTGATGCATTCCCACATATTGAATGCACTGTACTTGATCTCCCACATGTGGTGGCTGACCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCGATACAGTTTTACTCAAGTGGATATTGCATGACTGGAACGATGAAGAATGTATCAAAATACTTAAGCGATCTAGAGTGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCATAGATATGATGATGGAGAACCAGAAAGGCGATGAGGAATCAATTGAAACGCAGCTGTTCTTCGACATGCTGATGATGGCCCTCGTCACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCTGGTTTCAGTGACTATAAGGTAACTCCCATTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

367

Amino Acids

41.38

Weight (kDa)

5.71

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	31 - 119	1.5e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	140 - 349	3.7e-58	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15385
fragaria_vesca	FvH4_3g45180 FvH4_3g45190 FvH4_6g30170
malus_domestica	MD17G1207500.v1.1
prunus_persica	Prupe.3G082000_v2.0.a1 Prupe.6G009300_v2.0.a1
pyrus_communis	pycom03g00790 pycom17g21010
rosa_chinensis	RchiOBHm_Chr2g0136401
rosa_laevigata	RLG00000019528 RLG00000036989
rosa_multiflora	Rmu_sc0001381.1_g000022 Rmu_sc0001381.1_g000023 Rmu_sc0001998.1_g000013 Rmu_sc0011683.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001650 Rroxscaffold_2G00108320
rosa_rugosa	Rorug02G0329900 Rorug03G0305500.1 Rorug05G0477900 Rorug05G0479800
rosa_samantha	Rh2AG381100 Rh2BG387900 Rh2CG367100 Rh2DG404300 Rh5AG530100 Rh5BG557000 Rh5CG579800
rosa_wichuraiana	Rw5G049510 Rw5G049520 Rw5G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	729
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	2 cut(s)	151, 243
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	363, 392
AcuI	CTGAAG	2 cut(s)	88, 371
AfaI	GTAC	2 cut(s)	637, 693
AfiI	CCNNNNNNNGG	5 cut(s)	90, 352, 417, 709, 1070
AflII	CTTAAG	2 cut(s)	364, 845
AflIII	ACRYGT	2 cut(s)	706, 759
AgsI	TTSAA	5 cut(s)	143, 532, 683, 742, 947
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	7 cut(s)	18, 108, 199, 295, 343, 955, 1024
AluI	AGCT	7 cut(s)	18, 108, 199, 295, 343, 955, 1024
Alw21I	GWGCWC	3 cut(s)	201, 270, 434
Alw26I	GTCTC	1 cut(s)	1086
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	363, 392
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	654, 978
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	952
AspS9I	GGNCC	1 cut(s)	979
AsuHPI	GGTGA	3 cut(s)	556, 767, 904
AsuNHI	GCTAGC	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	3 cut(s)	201, 270, 434
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	3 cut(s)	513, 907, 970
BclI	TGATCA	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	1086
BfaI	CTAG	3 cut(s)	146, 546, 855
BfrI	CTTAAG	2 cut(s)	364, 845
BfuAI	ACCTGC	1 cut(s)	729
BisI	GCNGC	1 cut(s)	953
BlpI	GCTNAGC	1 cut(s)	1020
BlsI	GCNGC	1 cut(s)	954
BmgT120I	GGNCC	1 cut(s)	979
BmiI	GGNNCC	3 cut(s)	95, 440, 503
BmsI	GCATC	5 cut(s)	322, 526, 541, 655, 1024
BmtI	GCTAGC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	1020
BpuEI	CTTGAG	3 cut(s)	63, 448, 782
Bsa29I	ATCGAT	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	2 cut(s)	416, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 352, 417, 709, 1070
Bse1I	ACTGG	2 cut(s)	754, 821
Bse3DI	GCAATG	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	416, 540
BseGI	GGATG	2 cut(s)	358, 486
BseLI	CCNNNNNNNGG	5 cut(s)	90, 352, 417, 709, 1070
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	186, 287
BseNI	ACTGG	2 cut(s)	754, 821
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	964
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	656, 980
BshVI	ATCGAT	1 cut(s)	579
BsiHKAI	GWGCWC	3 cut(s)	201, 270, 434
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	90, 352, 417, 709, 1070
BsmAI	GTCTC	1 cut(s)	1086
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	3 cut(s)	55, 668, 689
BsnI	GGCC	2 cut(s)	656, 980
Bso31I	GGTCTC	1 cut(s)	1086
Bsp1286I	GDGCHC	3 cut(s)	201, 270, 434
Bsp143I	GATC	5 cut(s)	355, 397, 573, 697, 851
Bsp1720I	GCTNAGC	1 cut(s)	1020
Bsp19I	CCATGG	2 cut(s)	416, 540
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	656, 980
BspCNI	CTCAG	2 cut(s)	187, 288
BspDI	ATCGAT	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	95, 440, 503
BspMI	ACCTGC	1 cut(s)	729
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	363, 392
BspQI	GCTCTTC	1 cut(s)	1031
BspTI	CTTAAG	2 cut(s)	364, 845
BspTNI	GGTCTC	1 cut(s)	1086
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	754, 821
BssECI	CCNNGG	2 cut(s)	416, 540
BssMI	GATC	5 cut(s)	355, 397, 573, 697, 851
BssNAI	GTATAC	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	416, 540
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	646, 691, 790
Bst6I	CTCTTC	1 cut(s)	1031
BstAFI	CTTAAG	2 cut(s)	364, 845
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	4 cut(s)	195, 285, 296, 1020
BstDSI	CCRYGG	2 cut(s)	416, 540
BstEII	GGTNACC	1 cut(s)	562
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	358, 486
BstKTI	GATC	5 cut(s)	358, 400, 576, 700, 854
BstMAI	GTCTC	1 cut(s)	1086
BstMBI	GATC	5 cut(s)	355, 397, 573, 697, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 551
BstNSI	RCATGY	3 cut(s)	710, 763, 970
BstPI	GGTNACC	1 cut(s)	562
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	964
BstZ17I	GTATAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	656, 980
BsuTUI	ATCGAT	1 cut(s)	579
BtgI	CCRYGG	2 cut(s)	416, 540
BtgZI	GCGATG	2 cut(s)	564, 945
BtsCI	GGATG	2 cut(s)	358, 486
BtsIMutI	CAGTG	3 cut(s)	687, 1029, 1051
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	547
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	979
ClaI	ATCGAT	1 cut(s)	579
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	636, 692
CviQI	GTAC	2 cut(s)	636, 692
DdeI	CTNAG	4 cut(s)	195, 285, 296, 1020
DpnI	GATC	5 cut(s)	357, 399, 575, 699, 853
DpnII	GATC	5 cut(s)	355, 397, 573, 697, 851
Eam1104I	CTCTTC	1 cut(s)	1031
EarI	CTCTTC	1 cut(s)	1031
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	416, 540
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	1086
Eco32I	GATATC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	88, 371
Eco91I	GGTNACC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	562
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	416, 540
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	416, 540
FaqI	GGGAC	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	2 cut(s)	151, 243
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	2 cut(s)	345, 493
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	953
FspBI	CTAG	3 cut(s)	146, 546, 855
GluI	GCNGC	1 cut(s)	953
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	2 cut(s)	656, 980
HgaI	GACGC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	187, 611, 938
HphI	GGTGA	3 cut(s)	556, 767, 904
Hpy166II	GTNNAC	3 cut(s)	152, 244, 268
Hpy188I	TCNGA	2 cut(s)	196, 351
Hpy188III	TCNNGA	2 cut(s)	91, 855
Hpy8I	GTNNAC	3 cut(s)	152, 244, 268
HpyAV	CCTTC	4 cut(s)	308, 346, 356, 388
HpyCH4III	ACNGT	3 cut(s)	646, 691, 790
HpyCH4V	TGCA	8 cut(s)	137, 209, 268, 588, 668, 687, 724, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 551
HpyF3I	CTNAG	4 cut(s)	195, 285, 296, 1020
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	5 cut(s)	355, 397, 573, 697, 851
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	5 cut(s)	322, 526, 541, 655, 1024
MaeI	CTAG	3 cut(s)	146, 546, 855
MaeIII	GTNAC	5 cut(s)	562, 755, 985, 1046, 1057
MalI	GATC	5 cut(s)	357, 399, 575, 699, 853
MboI	GATC	5 cut(s)	355, 397, 573, 697, 851
MboII	GAAGA	5 cut(s)	94, 520, 839, 952, 1018
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	3 cut(s)	201, 270, 434
MluCI	AATT	4 cut(s)	138, 421, 864, 942
MlyI	GAGTC	2 cut(s)	181, 620
MmeI	TCCRAC	2 cut(s)	84, 607
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	5 cut(s)	30, 365, 383, 846, 1076
MslI	CAYNNNNRTG	3 cut(s)	569, 905, 971
MspA1I	CMGCKG	1 cut(s)	955
MspCI	CTTAAG	2 cut(s)	364, 845
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	3 cut(s)	55, 668, 689
MwoI	GCNNNNNNNGC	2 cut(s)	246, 551
NcoI	CCATGG	2 cut(s)	416, 540
NdeII	GATC	5 cut(s)	355, 397, 573, 697, 851
NheI	GCTAGC	1 cut(s)	545
NlaIV	GGNNCC	3 cut(s)	95, 440, 503
NmuCI	GTSAC	4 cut(s)	562, 755, 985, 1046
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	3 cut(s)	710, 763, 970
OliI	CACNNNNGTG	1 cut(s)	569
PciI	ACATGT	2 cut(s)	706, 759
PciSI	GCTCTTC	1 cut(s)	1031
PctI	GAATGC	3 cut(s)	55, 668, 689
PfeI	GAWTC	1 cut(s)	938
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	2 cut(s)	181, 619
PpsI	GAGTC	2 cut(s)	181, 619
PscI	ACATGT	2 cut(s)	706, 759
Psp124BI	GAGCTC	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	95, 440, 503
PspPI	GGNCC	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	2 cut(s)	637, 693
RsaNI	GTAC	2 cut(s)	636, 692
RseI	CAYNNNNRTG	3 cut(s)	569, 905, 971
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	1031
SaqAI	TTAA	5 cut(s)	30, 365, 383, 846, 1076
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	5 cut(s)	355, 397, 573, 697, 851
Sau96I	GGNCC	1 cut(s)	979
SchI	GAGTC	2 cut(s)	181, 620
SduI	GDGCHC	3 cut(s)	201, 270, 434
SfaNI	GCATC	5 cut(s)	322, 526, 541, 655, 1024
SmiMI	CAYNNNNRTG	3 cut(s)	569, 905, 971
SmlI	CTYRAG	5 cut(s)	78, 364, 427, 797, 845
SmoI	CTYRAG	5 cut(s)	78, 364, 427, 797, 845
Sse9I	AATT	4 cut(s)	138, 421, 864, 942
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	146, 546, 855
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	416, 540
TaaI	ACNGT	3 cut(s)	646, 691, 790
TaqI	TCGA	3 cut(s)	396, 579, 963
TasI	AATT	4 cut(s)	138, 421, 864, 942
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	5 cut(s)	30, 365, 383, 846, 1076
Tru9I	TTAA	5 cut(s)	30, 365, 383, 846, 1076
TscAI	CASTG	3 cut(s)	694, 1036, 1051
TseFI	GTSAC	4 cut(s)	562, 755, 985, 1046
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	4 cut(s)	562, 755, 985, 1046
TspDTI	ATGAA	3 cut(s)	62, 100, 840
TspRI	CASTG	3 cut(s)	694, 1036, 1051
Van91I	CCANNNNNTGG	1 cut(s)	417
Vha464I	CTTAAG	2 cut(s)	364, 845
VneI	GTGCAC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	3 cut(s)	710, 763, 970
XmiI	GTMKAC	2 cut(s)	151, 243
XspI	CTAG	3 cut(s)	146, 546, 855
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.