Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004345

Physical Location & Seq

Genomic Coordinates Forward (+)

6075315 .. 6076129

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGAAGAGCACCATGTCTTCTCCTCATCCATACCAGTCTCCGGTAATTGTCGACGAGAAAGACGAAGCCAAAAGCTTTAGAGTGGAAAAAGTTGGAGCTTCAAGGTCTCATGCTATGGAAAATGGCAAGGAGGAAGCACCAAAGAATAAGCTAGAGAGGAAGTCAACTGAAGACATCAACGAAAGCGCAGAGGCGTTCATCAAGAAGTTCAGGAAGCAGCTTTTGATCCAAAGGCTTGAGTCGATTGAGAATTATGAGCAAATGCTTGCGAGGGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

95

Amino Acids

10.82

Weight (kDa)

8.89

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15385
fragaria_vesca	FvH4_3g45180 FvH4_3g45190 FvH4_6g30170
malus_domestica	MD17G1207500.v1.1
prunus_persica	Prupe.3G082000_v2.0.a1 Prupe.6G009300_v2.0.a1
pyrus_communis	pycom03g00790 pycom17g21010
rosa_chinensis	RchiOBHm_Chr2g0136401
rosa_laevigata	RLG00000019528 RLG00000036989
rosa_multiflora	Rmu_sc0001381.1_g000022 Rmu_sc0001381.1_g000023 Rmu_sc0001998.1_g000013 Rmu_sc0011683.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001650 Rroxscaffold_2G00108320
rosa_rugosa	Rorug02G0329900 Rorug03G0305500.1 Rorug05G0477900 Rorug05G0479800
rosa_samantha	Rh2AG381100 Rh2BG387900 Rh2CG367100 Rh2DG404300 Rh5AG530100 Rh5BG557000 Rh5CG579800
rosa_wichuraiana	Rw5G049510 Rw5G049520 Rw5G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	4 cut(s)	78, 101, 154, 223
AluI	AGCT	4 cut(s)	78, 101, 154, 223
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	45, 114
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	12, 180
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	45, 114
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BpiI	GAAGAC	2 cut(s)	12, 180
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	45, 114
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	45, 114
BstMBI	GATC	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	2 cut(s)	12, 180
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	16, 113
CviJI	RGCY	7 cut(s)	71, 78, 101, 154, 223, 238, 279
CviKI_1	RGCY	7 cut(s)	71, 78, 101, 154, 223, 238, 279
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	277
FaeI	CATG	2 cut(s)	19, 116
FaiI	YATR	5 cut(s)	17, 34, 114, 119, 258
FatI	CATG	2 cut(s)	15, 112
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	19, 116
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	2 cut(s)	55, 168
HindII	GTYRAC	2 cut(s)	55, 168
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	55, 168
Hpy188III	TCNNGA	2 cut(s)	205, 214
Hpy8I	GTNNAC	2 cut(s)	55, 168
Hpy99I	CGWCG	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	19, 116
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	228
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	50, 57, 199
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	155
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	4 cut(s)	12, 16, 19, 185
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	48, 253
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	36, 127, 153, 187, 267
MspI	CCGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	19, 116
NlaIV	GGNNCC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	2
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	2
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	5 cut(s)	80, 103, 110, 156, 225
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	48, 253
SspMI	CTAG	1 cut(s)	155
TaqI	TCGA	2 cut(s)	54, 245
TasI	AATT	2 cut(s)	48, 253
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	17, 190
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.