Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0004345

Physical Location & Seq

Genomic Coordinates Reverse (-)

87664 .. 87996

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaacgttgtaaacaacacaaagggatttcgaagcacaattctctccaaccccctcattaaatccaacatcaagaaatctttgagctatcttaccaaaccggctgtcatggatgctcgtcaagaggttgctgcgcgtggaagccaacgagtgcagaaggaaaaggataatacaaagaaacaggcaatgagcagaaggatgatggcagcggatgagcaaggcgacattaatgatatggctgatgccttcatcaagaagttcaggaagcagctaaagagtcaaagggaagaatcattcaaaaggtttcaggaaatgattgctcgtggggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

110

Amino Acids

12.64

Weight (kDa)

10.4

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15385
fragaria_vesca	FvH4_3g45180 FvH4_3g45190 FvH4_6g30170
malus_domestica	MD17G1207500.v1.1
prunus_persica	Prupe.3G082000_v2.0.a1 Prupe.6G009300_v2.0.a1
pyrus_communis	pycom03g00790 pycom17g21010
rosa_chinensis	RchiOBHm_Chr2g0136401
rosa_laevigata	RLG00000019528 RLG00000036989
rosa_multiflora	Rmu_sc0001381.1_g000022 Rmu_sc0001381.1_g000023 Rmu_sc0001998.1_g000013 Rmu_sc0011683.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001650 Rroxscaffold_2G00108320
rosa_rugosa	Rorug02G0329900 Rorug03G0305500.1 Rorug05G0477900 Rorug05G0479800
rosa_samantha	Rh2AG381100 Rh2BG387900 Rh2CG367100 Rh2DG404300 Rh5AG530100 Rh5BG557000 Rh5CG579800
rosa_wichuraiana	Rw5G049510 Rw5G049520 Rw5G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	136
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	2 cut(s)	87, 271
AluI	AGCT	2 cut(s)	87, 271
ApeKI	GCWGC	3 cut(s)	131, 206, 268
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	31
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	118, 218, 280
BccI	CCATC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	132, 207, 269
BlsI	GCNGC	3 cut(s)	133, 208, 270
BmsI	GCATC	2 cut(s)	103, 232
Bpu14I	TTCGAA	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	118, 204, 217
BseMI	GCAATG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	118, 218, 280
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	31
BspACI	CCGC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	136
BspT104I	TTCGAA	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	118, 204, 217
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	118, 218, 280
BtsCI	GGATG	3 cut(s)	118, 204, 217
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	100
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	87, 104, 144, 239, 271
CviKI_1	RGCY	5 cut(s)	87, 104, 144, 239, 271
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 236
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	132, 207, 269
FokI	GGATG	3 cut(s)	125, 211, 224
Fsp4HI	GCNGC	3 cut(s)	132, 207, 269
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	132, 207, 269
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	277, 290
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	5 cut(s)	73, 122, 253, 262, 308
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	151, 189, 256
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	114, 167, 247, 293
Lsp1109I	GCAGC	3 cut(s)	118, 218, 280
LweI	GCATC	2 cut(s)	103, 232
MaeII	ACGT	1 cut(s)	6
MboII	GAAGA	1 cut(s)	299
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	72, 90
MnlI	CCTC	2 cut(s)	65, 118
MseI	TTAA	2 cut(s)	60, 228
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	136
NlaIII	CATG	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	133, 208, 270
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PshBI	ATTAAT	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	60, 228
SatI	GCNGC	3 cut(s)	132, 207, 269
SchI	GAGTC	1 cut(s)	286
SetI	ASST	5 cut(s)	9, 89, 129, 273, 305
SfaNI	GCATC	2 cut(s)	103, 232
SfuI	TTCGAA	1 cut(s)	31
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	209
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	60, 228
Tru9I	TTAA	2 cut(s)	60, 228
TseI	GCWGC	3 cut(s)	131, 206, 268
TspDTI	ATGAA	2 cut(s)	17, 238
VspI	ATTAAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.