Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004345

Physical Location & Seq

Genomic Coordinates Forward (+)

66124627 .. 66127548

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0479800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAAGTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCTGCTGATATGGGTGGTCGCTGCGATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTGGGTCACAATCACACTCATCATCATCATCATCATCATCATGCTTGTGGAGACTTGGATCATCATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCGAAGGAGCTTACCTGCATGTTATGGCTGACATGATTCAGTCTGTTGGAGTAATGATTGCCGGAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATCGACAAGCTAGAGAAAGGTCTCAAGTGCATCAGAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGACGTGCCATGTTACCGCGGATTCTACAGTAGGCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAATTTACAGAATACATAATGTTACTGTACAGATTGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

387

Amino Acids

43.0

Weight (kDa)

5.99

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	64 - 309	1.7e-39	Cation efflux transmembrane domain
ZT_dimer	PF16916	313 - 386	5.9e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15385
fragaria_vesca	FvH4_3g45180 FvH4_3g45190 FvH4_6g30170
malus_domestica	MD17G1207500.v1.1
prunus_persica	Prupe.3G082000_v2.0.a1 Prupe.6G009300_v2.0.a1
pyrus_communis	pycom03g00790 pycom17g21010
rosa_chinensis	RchiOBHm_Chr2g0136401
rosa_laevigata	RLG00000019528 RLG00000036989
rosa_multiflora	Rmu_sc0001381.1_g000022 Rmu_sc0001381.1_g000023 Rmu_sc0001998.1_g000013 Rmu_sc0011683.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001650 Rroxscaffold_2G00108320
rosa_rugosa	Rorug02G0329900 Rorug03G0305500.1 Rorug05G0477900 Rorug05G0479800
rosa_samantha	Rh2AG381100 Rh2BG387900 Rh2CG367100 Rh2DG404300 Rh5AG530100 Rh5BG557000 Rh5CG579800
rosa_wichuraiana	Rw5G049510 Rw5G049520 Rw5G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccII	CGCG	1 cut(s)	1064
AciI	CCGC	2 cut(s)	1062, 1064
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	49, 618
AcsI	RAATTY	1 cut(s)	1122
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	195, 267, 1149
AfiI	CCNNNNNNNGG	2 cut(s)	385, 816
AflIII	ACRYGT	1 cut(s)	1012
AgsI	TTSAA	4 cut(s)	159, 230, 680, 1157
AjiI	CACGTC	1 cut(s)	1050
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	335, 696, 752, 961
AluI	AGCT	4 cut(s)	335, 696, 752, 961
Alw26I	GTCTC	3 cut(s)	70, 597, 977
AlwI	GGATC	2 cut(s)	49, 618
ApeKI	GCWGC	4 cut(s)	278, 412, 431, 512
ApoI	RAATTY	1 cut(s)	1122
AspLEI	GCGC	2 cut(s)	400, 671
AsuHPI	GGTGA	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	1024
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	290, 399, 418, 524
BccI	CCATC	2 cut(s)	125, 818
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	622, 646
BcoDI	GTCTC	3 cut(s)	70, 597, 977
BfaI	CTAG	3 cut(s)	27, 693, 962
BfmI	CTRYAG	1 cut(s)	1071
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	4 cut(s)	279, 413, 432, 513
BlsI	GCNGC	4 cut(s)	280, 414, 433, 514
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	1050
BmiI	GGNNCC	2 cut(s)	18, 808
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	4 cut(s)	265, 888, 915, 990
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	404, 959, 1066
BsaBI	GATNNNNATC	3 cut(s)	440, 615, 950
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	1062
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 816
Bse1I	ACTGG	2 cut(s)	361, 713
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	3 cut(s)	440, 615, 950
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	1062
BseGI	GGATG	1 cut(s)	1003
BseJI	GATNNNNATC	3 cut(s)	440, 615, 950
BseLI	CCNNNNNNNGG	2 cut(s)	385, 816
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	916
BseNI	ACTGG	2 cut(s)	361, 713
BseRI	GAGGAG	1 cut(s)	1002
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	4 cut(s)	290, 399, 418, 524
BseYI	CCCAGC	2 cut(s)	39, 553
BsgI	GTGCAG	1 cut(s)	838
Bsh1236I	CGCG	1 cut(s)	1064
BsiSI	CCGG	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	385, 816
BsmAI	GTCTC	3 cut(s)	70, 597, 977
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
Bso31I	GGTCTC	1 cut(s)	977
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp1407I	TGTACA	1 cut(s)	1147
Bsp143I	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
BspACI	CCGC	2 cut(s)	1062, 1064
BspCNI	CTCAG	1 cut(s)	915
BspFNI	CGCG	1 cut(s)	1064
BspHI	TCATGA	3 cut(s)	619, 643, 1003
BspLI	GGNNCC	2 cut(s)	18, 808
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	2 cut(s)	49, 618
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1147
BsrI	ACTGG	2 cut(s)	361, 713
BssECI	CCNNGG	1 cut(s)	1062
BssMI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	1147
BstC8I	GCNNGC	2 cut(s)	477, 667
BstDEI	CTNAG	1 cut(s)	902
BstDSI	CCRYGG	1 cut(s)	1062
BstF5I	GGATG	1 cut(s)	1003
BstFNI	CGCG	1 cut(s)	1064
BstHHI	GCGC	2 cut(s)	400, 671
BstKTI	GATC	9 cut(s)	57, 82, 438, 444, 613, 625, 649, 847, 852
BstMAI	GTCTC	3 cut(s)	70, 597, 977
BstMBI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	1064
BstV1I	GCAGC	4 cut(s)	290, 399, 418, 524
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	1062
BtrI	CACGTC	1 cut(s)	1050
BtsCI	GGATG	1 cut(s)	1003
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	477, 667
CciI	TCATGA	3 cut(s)	619, 643, 1003
CfoI	GCGC	2 cut(s)	400, 671
Cfr42I	CCGCGG	1 cut(s)	1065
Csp6I	GTAC	3 cut(s)	194, 266, 1148
CviQI	GTAC	3 cut(s)	194, 266, 1148
DdeI	CTNAG	1 cut(s)	902
DpnI	GATC	9 cut(s)	56, 81, 437, 443, 612, 624, 648, 846, 851
DpnII	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	977
Eco32I	GATATC	2 cut(s)	374, 952
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	2 cut(s)	374, 952
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	2 cut(s)	622, 646
Fnu4HI	GCNGC	4 cut(s)	279, 413, 432, 513
FokI	GGATG	1 cut(s)	1010
Fsp4HI	GCNGC	4 cut(s)	279, 413, 432, 513
FspBI	CTAG	3 cut(s)	27, 693, 962
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	2 cut(s)	399, 670
GluI	GCNGC	4 cut(s)	279, 413, 432, 513
GsaI	CCCAGC	2 cut(s)	43, 557
GsuI	CTGGAG	1 cut(s)	696
HapII	CCGG	1 cut(s)	804
HhaI	GCGC	2 cut(s)	400, 671
Hin6I	GCGC	2 cut(s)	398, 669
HinP1I	GCGC	2 cut(s)	398, 669
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	5 cut(s)	35, 155, 306, 778, 1067
HpaII	CCGG	1 cut(s)	804
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	170, 194, 457
Hpy188I	TCNGA	5 cut(s)	70, 849, 905, 986, 1089
Hpy188III	TCNNGA	9 cut(s)	27, 58, 383, 439, 620, 644, 743, 995, 1004
Hpy8I	GTNNAC	3 cut(s)	170, 194, 457
HpyAV	CCTTC	2 cut(s)	7, 740
HpyCH4III	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
HpyCH4IV	ACGT	2 cut(s)	166, 1049
HpyCH4V	TGCA	9 cut(s)	278, 326, 479, 506, 512, 760, 855, 928, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpyF3I	CTNAG	1 cut(s)	902
HpySE526I	ACGT	2 cut(s)	166, 1049
HspAI	GCGC	2 cut(s)	398, 669
Ksp22I	TGATCA	2 cut(s)	622, 646
KspI	CCGCGG	1 cut(s)	1065
Kzo9I	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	4, 749, 806
Lsp1109I	GCAGC	4 cut(s)	290, 399, 418, 524
LweI	GCATC	4 cut(s)	265, 888, 915, 990
MaeI	CTAG	3 cut(s)	27, 693, 962
MaeII	ACGT	2 cut(s)	166, 1049
MaeIII	GTNAC	4 cut(s)	102, 557, 1057, 1141
MalI	GATC	9 cut(s)	56, 81, 437, 443, 612, 624, 648, 846, 851
MboI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
MboII	GAAGA	3 cut(s)	74, 105, 692
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	9 cut(s)	48, 148, 201, 231, 532, 675, 705, 1092, 1122
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	769, 1012
MnlI	CCTC	5 cut(s)	340, 379, 652, 720, 980
MseI	TTAA	2 cut(s)	531, 731
MslI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
MspA1I	CMGCKG	1 cut(s)	1064
MspI	CCGG	1 cut(s)	804
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
NlaIV	GGNNCC	2 cut(s)	18, 808
NmuCI	GTSAC	1 cut(s)	557
NsbI	TGCGCA	1 cut(s)	670
NspI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
PaeI	GCATGC	2 cut(s)	479, 669
PagI	TCATGA	3 cut(s)	619, 643, 1003
PciI	ACATGT	1 cut(s)	1012
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	155, 306, 778, 1067
PflMI	CCANNNNNTGG	1 cut(s)	816
PkrI	GCNGC	4 cut(s)	280, 414, 433, 514
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	1012
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	2 cut(s)	39, 553
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	18, 808
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	3 cut(s)	195, 267, 1149
RsaNI	GTAC	3 cut(s)	194, 266, 1148
RseI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
SacII	CCGCGG	1 cut(s)	1065
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	531, 731
SatI	GCNGC	4 cut(s)	279, 413, 432, 513
Sau3AI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	4 cut(s)	265, 888, 915, 990
SfcI	CTRYAG	1 cut(s)	1071
Sfr303I	CCGCGG	1 cut(s)	1065
SgrBI	CCGCGG	1 cut(s)	1065
SmiMI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
SmlI	CTYRAG	3 cut(s)	383, 974, 1081
SmoI	CTYRAG	3 cut(s)	383, 974, 1081
SphI	GCATGC	2 cut(s)	479, 669
Sse9I	AATT	9 cut(s)	48, 148, 201, 231, 532, 675, 705, 1092, 1122
SsiI	CCGC	2 cut(s)	1062, 1064
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	3 cut(s)	27, 693, 962
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
TaiI	ACGT	2 cut(s)	169, 1052
TaqI	TCGA	3 cut(s)	251, 744, 954
TasI	AATT	9 cut(s)	48, 148, 201, 231, 532, 675, 705, 1092, 1122
TatI	WGTACW	3 cut(s)	193, 265, 1147
TfiI	GAWTC	4 cut(s)	155, 306, 778, 1067
Tru1I	TTAA	2 cut(s)	531, 731
Tru9I	TTAA	2 cut(s)	531, 731
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	4 cut(s)	278, 412, 431, 512
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	4 cut(s)	60, 462, 702, 992
Van91I	CCANNNNNTGG	1 cut(s)	816
XapI	RAATTY	1 cut(s)	1122
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
XspI	CTAG	3 cut(s)	27, 693, 962
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.