AT1G15415

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004017
Physical Location & Seq
Reverse (-)
5300742 .. 5301489
748 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15415.1

Sequence Viewer

Length: 291 bp
ATGGCGAGCGGACAGGATGAGGAATTCAGTGTGAGGGCCGGCCAAATCGTGGGCCAAGCTCATGTGAAGGAGAATGATTGCAACAACTCTTCTCAAGCTTCAGGTTTTCTCCAGCAGAAAGGGGAGAAAGTGAAGAGTATGGCACATGATGCATCAGAGGCAGTGAAGAACAAATTGGGGATCAACAATGACAACAATGAAGAATATAAGAACAAAAACCCTTTGGACAAGAAGAACCCTAACAACACAACCAGTCCAAGCATGCCTGGTCATCCTCCTTCAGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.4

Weight (kDa)

5.86

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 84, 264
AfiI CCNNNNNNNGG 1 cut(s) 49
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 59, 98
AluI AGCT 2 cut(s) 59, 98
AlwI GGATC 1 cut(s) 188
AoxI GGCC 3 cut(s) 36, 40, 52
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 36, 52
BciT130I CCWGG 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 36, 52
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 139, 161
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 22, 271
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 252
BshFI GGCC 3 cut(s) 38, 42, 54
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 3 cut(s) 38, 42, 54
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 38, 42, 54
BspPI GGATC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 94, 128
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 7, 40, 263
BstF5I GGATG 2 cut(s) 22, 271
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 265
BsuRI GGCC 3 cut(s) 38, 42, 54
BtsCI GGATG 2 cut(s) 22, 271
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 34, 168
Cac8I GCNNGC 3 cut(s) 7, 40, 263
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 36, 52
CviAII CATG 3 cut(s) 62, 146, 262
CviJI RGCY 5 cut(s) 38, 42, 54, 59, 98
CviKI_1 RGCY 5 cut(s) 38, 42, 54, 59, 98
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 94, 128
EarI CTCTTC 2 cut(s) 94, 128
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 84, 264
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 3 cut(s) 65, 149, 265
FaiI YATR 5 cut(s) 63, 140, 147, 207, 263
FatI CATG 3 cut(s) 61, 145, 261
FokI GGATG 2 cut(s) 29, 258
FseI GGCCGGCC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 3 cut(s) 38, 42, 54
HapII CCGG 1 cut(s) 39
Hin1II CATG 3 cut(s) 65, 149, 265
HindIII AAGCTT 1 cut(s) 96
HpaII CCGG 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 157, 283
HpyAV CCTTC 2 cut(s) 61, 288
HpyCH4V TGCA 2 cut(s) 81, 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
Hsp92II CATG 3 cut(s) 65, 149, 265
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 52, 87, 125, 252, 265, 279
LweI GCATC 2 cut(s) 139, 161
MalI GATC 1 cut(s) 182
MbiI CCGCTC 1 cut(s) 9
MboI GATC 1 cut(s) 180
MboII GAAGA 5 cut(s) 81, 145, 178, 212, 244
MluCI AATT 2 cut(s) 23, 173
MnlI CCTC 4 cut(s) 13, 27, 151, 285
Mph1103I ATGCAT 1 cut(s) 154
MroNI GCCGGC 1 cut(s) 38
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NaeI GCCGGC 1 cut(s) 40
NdeII GATC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 65, 149, 265
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 2 cut(s) 36, 52
RigI GGCCGGCC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 36, 52
ScrFI CCNGG 1 cut(s) 267
SetI ASST 3 cut(s) 61, 100, 106
SfaNI GCATC 2 cut(s) 139, 161
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SphI GCATGC 1 cut(s) 265
Sse9I AATT 2 cut(s) 23, 173
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 265
TasI AATT 2 cut(s) 23, 173
TscAI CASTG 2 cut(s) 34, 168
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 2 cut(s) 34, 168
Van91I CCANNNNNTGG 1 cut(s) 49
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.