Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

32124858 .. 32125634

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGTCCCACGGTCAGAGACAGAGATACAGAGGCCAAACTCAGGAACAAAATAGGCAGAACAGGTCACAGGACAGGGACTACGACATGACCCAAGAGGCAAGGCGGAAGGCGGAGGAGGCGAAGAACAAGACCTACGAGACCGCGCAACAAGCCAAGGAGAAAACACAGTCTACAATGAACCAGGTGAAGGACAAGGCGGCGCAGGAGGCAGAGGAGGCAAGGCGGAAGGCCCAAGAGGAGGCGGAGAAGACCAAAGAGACTGCCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTTCAGCAGACCGGAGAAACAATGAAGAACGTTGCACAAGGTGCGGCTGATGCTGTGAGGAGCACTATTGGGATGGCCAAGAACGATGACCAGGATGATCCTTGTTATAGGGAGACTACTACCACTACTAGGACTAATACTGGGACTACAGGGGCTCCTGGGACTGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

7.78

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	146
AciI	CCGC	8 cut(s)	106, 113, 144, 200, 226, 245, 291, 341
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	338
AfiI	CCNNNNNNNGG	6 cut(s)	43, 190, 241, 273, 426, 461
AjnI	CCWGG	4 cut(s)	183, 267, 387, 454
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	4 cut(s)	13, 134, 254, 404
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	4 cut(s)	34, 231, 270, 372
AspLEI	GCGC	2 cut(s)	148, 205
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	257, 290
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	1 cut(s)	364
BciT130I	CCWGG	4 cut(s)	185, 269, 389, 456
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	4 cut(s)	13, 134, 254, 404
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	201, 342
BlsI	GCNGC	2 cut(s)	202, 343
Bme1390I	CCNGG	5 cut(s)	185, 269, 274, 389, 456
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	5 cut(s)	185, 269, 274, 389, 456
BmrI	ACTGGG	2 cut(s)	447, 471
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	2 cut(s)	447, 471
BpiI	GAAGAC	2 cut(s)	257, 290
BpuMI	CCSGG	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	4 cut(s)	10, 156, 267, 455
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 190, 241, 273, 426, 461
Bse1I	ACTGG	2 cut(s)	442, 466
BseBI	CCWGG	4 cut(s)	185, 269, 389, 456
BseDI	CCNNGG	4 cut(s)	10, 156, 267, 455
BseGI	GGATG	2 cut(s)	375, 397
BseLI	CCNNNNNNNGG	6 cut(s)	43, 190, 241, 273, 426, 461
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	442, 466
BseRI	GAGGAG	4 cut(s)	131, 230, 254, 370
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	36, 233, 272, 374
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	2 cut(s)	273, 309
BslFI	GGGAC	2 cut(s)	92, 454
BslI	CCNNNNNNNGG	6 cut(s)	43, 190, 241, 273, 426, 461
BsmAI	GTCTC	4 cut(s)	13, 134, 254, 404
BsmFI	GGGAC	2 cut(s)	92, 454
BsnI	GGCC	4 cut(s)	36, 233, 272, 374
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	362, 454
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	8 cut(s)	106, 113, 144, 200, 226, 245, 291, 341
BspANI	GGCC	4 cut(s)	36, 233, 272, 374
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	442, 466
BssECI	CCNNGG	4 cut(s)	10, 156, 267, 455
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	185, 269, 389, 456
Bst4CI	ACNGT	2 cut(s)	14, 171
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	375, 397
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	148, 205
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	4 cut(s)	13, 134, 254, 404
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 152, 209, 218, 338, 347
BstNI	CCWGG	4 cut(s)	185, 269, 389, 456
BstSCI	CCNGG	5 cut(s)	183, 267, 272, 387, 454
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	146
BstV2I	GAAGAC	2 cut(s)	257, 290
BsuRI	GGCC	4 cut(s)	36, 233, 272, 374
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	375, 397
CfoI	GCGC	2 cut(s)	148, 205
Cfr13I	GGNCC	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	183
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	36, 155, 233, 272, 344, 374, 452
CviKI_1	RGCY	7 cut(s)	36, 155, 233, 272, 344, 374, 452
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	4 cut(s)	121, 128, 241, 260
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	4 cut(s)	183, 267, 387, 454
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 405
FaqI	GGGAC	2 cut(s)	92, 454
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	284
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	201, 342
FokI	GGATG	2 cut(s)	382, 404
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	201, 342
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	2 cut(s)	147, 204
GluI	GCNGC	2 cut(s)	201, 342
HaeIII	GGCC	4 cut(s)	36, 233, 272, 374
HapII	CCGG	2 cut(s)	273, 309
HhaI	GCGC	2 cut(s)	148, 205
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	2 cut(s)	146, 203
HinP1I	GCGC	2 cut(s)	146, 203
HinfI	GANTC	2 cut(s)	5, 295
HpaII	CCGG	2 cut(s)	273, 309
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	103, 184, 223, 271
HpyCH4III	ACNGT	2 cut(s)	14, 171
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 152, 209, 218, 338, 347
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	2 cut(s)	146, 203
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	357, 457
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	396
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	1 cut(s)	394
MboII	GAAGA	5 cut(s)	136, 262, 290, 295, 334
MhlI	GDGCHC	2 cut(s)	362, 454
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	14
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	469
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	2 cut(s)	273, 309
MspR9I	CCNGG	5 cut(s)	185, 269, 274, 389, 456
MvaI	CCWGG	4 cut(s)	185, 269, 389, 456
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	6 cut(s)	119, 152, 209, 218, 338, 347
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	202, 343
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	327
Psp6I	CCWGG	4 cut(s)	183, 267, 387, 454
PspGI	CCWGG	4 cut(s)	183, 267, 387, 454
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	2 cut(s)	201, 342
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	5 cut(s)	185, 269, 274, 389, 456
SduI	GDGCHC	2 cut(s)	362, 454
SetI	ASST	5 cut(s)	68, 137, 189, 330, 340
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	444
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	8 cut(s)	106, 113, 144, 200, 226, 245, 291, 341
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	5 cut(s)	183, 267, 272, 387, 454
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	14, 171
TaiI	ACGT	1 cut(s)	330
TasI	AATT	1 cut(s)	466
TauI	GCSGC	2 cut(s)	203, 344
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	194, 335
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.