Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

860056 .. 860478

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGATGCACTTCCCGTTCTTTTTTTACATCCAGGAAAAGACAAATCAGATGATGGACACAATTGGGCAGAAGGCCCAAGAAGTAAAGGACAAGACCCACGAGACAGCCCAGGCAGCCCAGGAGAGAGCAAAGGGTGCAACTCAAACAACTAGAGACAAGGGCCAAGAGAAGGGAAAAGTTACGAAGGCAAAGGCACGGCAGAGCAAGGAGGCGACCGAGGAGAAGGCCTCGGAGGTAGGTCAAAAGGCCAAAGACACCTCGGACGCTGGCAAGGAGAAGTCGGAGGGGTTCGTCCAGCAGACCGGAGAGAAAGTGAAAAACATGGCACAGACTACTGCTGATGCTGTCAAGAATACGTTTGGCATGGCAAAGGACGATGAGGAAGACGACGTTGTTTACTCTAGGAAGGAGAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

6.76

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	33, 111, 120
Alw26I	GTCTC	2 cut(s)	98, 150
AoxI	GGCC	4 cut(s)	75, 163, 228, 249
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	76, 163
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	35, 113, 122
BcoDI	GTCTC	2 cut(s)	98, 150
BfaI	CTAG	3 cut(s)	153, 405, 421
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	35, 113, 122
BmgT120I	GGNCC	2 cut(s)	76, 163
BmrFI	CCNGG	3 cut(s)	35, 113, 122
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaJI	CCNNGG	5 cut(s)	111, 120, 219, 231, 261
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	3 cut(s)	35, 113, 122
BseDI	CCNNGG	5 cut(s)	111, 120, 219, 231, 261
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	4 cut(s)	77, 165, 230, 251
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	98, 150
BsnI	GGCC	4 cut(s)	77, 165, 230, 251
BspANI	GGCC	4 cut(s)	77, 165, 230, 251
BssECI	CCNNGG	5 cut(s)	111, 120, 219, 231, 261
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	3 cut(s)	35, 113, 122
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	98, 150
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 137
BstNI	CCWGG	3 cut(s)	35, 113, 122
BstSCI	CCNGG	3 cut(s)	33, 111, 120
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	77, 165, 230, 251
BtsCI	GGATG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	76, 163
CseI	GACGC	1 cut(s)	275
CviAII	CATG	2 cut(s)	325, 367
CviJI	RGCY	6 cut(s)	77, 110, 119, 165, 230, 251
CviKI_1	RGCY	6 cut(s)	77, 110, 119, 165, 230, 251
Eco147I	AGGCCT	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	33, 111, 120
FaeI	CATG	2 cut(s)	328, 370
FaiI	YATR	2 cut(s)	326, 368
FatI	CATG	2 cut(s)	324, 366
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	3 cut(s)	153, 405, 421
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	77, 165, 230, 251
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	328, 370
HpaII	CCGG	1 cut(s)	306
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	4 cut(s)	51, 235, 265, 286
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	5 cut(s)	67, 166, 181, 220, 403
HpyCH4IV	ACGT	2 cut(s)	359, 393
HpyCH4V	TGCA	2 cut(s)	10, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 137
HpySE526I	ACGT	2 cut(s)	359, 393
Hsp92II	CATG	2 cut(s)	328, 370
LpnPI	CCDG	9 cut(s)	20, 47, 98, 107, 125, 134, 255, 311, 319
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	3 cut(s)	153, 405, 421
MaeII	ACGT	2 cut(s)	359, 393
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	8 cut(s)	205, 214, 229, 241, 271, 280, 376, 408
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	35, 113, 122
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	3 cut(s)	35, 113, 122
MwoI	GCNNNNNNNGC	2 cut(s)	116, 137
NlaIII	CATG	2 cut(s)	328, 370
PceI	AGGCCT	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	33, 111, 120
PspGI	CCWGG	3 cut(s)	33, 111, 120
PspPI	GGNCC	2 cut(s)	76, 163
SatI	GCNGC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	76, 163
ScrFI	CCNGG	3 cut(s)	35, 113, 122
SetI	ASST	5 cut(s)	240, 244, 263, 362, 396
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	63
SseBI	AGGCCT	1 cut(s)	230
SspMI	CTAG	3 cut(s)	153, 405, 421
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	33, 111, 120
TaiI	ACGT	2 cut(s)	362, 396
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	63
TseI	GCWGC	1 cut(s)	116
XspI	CTAG	3 cut(s)	153, 405, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.