Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

911398 .. 912378

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1011800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGTCTCACAGACAGACCTACCGAGCTGGTGAAGCCAAGGGCCAAGCTCAGGAAAAGACAAATCAGATGATGGACACAATTGGGCAGGAGGCCCAAGAAGTAAAGGACAAGACCCACGAGACAGCCCAGGCAGCCAAGGAGAGAGCAAAGGGTGCAACTCAAACAACTAGAGACAAGGGCCAAGAGAAGGGACAAGTTACAAAGGCAAAGGCACGGCAGAGCAAGGAGGCGACCGAGGAGAAGGCCTCGGAGGTAGGCCAGAAGGCCAAAGGCACCGCGGACGCTGGCAAGGAGAAGTCGGAGGGGTTCCTCCAGCAGACCGGAGAGAAAGTGAAGAACATGGCACAGACTACTACTGATGCTGTCAAGAATACGTTGGGCATGGCAAAGGACGACGAGGAAGAAGATGTTGTTTACTCTAGGAAGGAGAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

147

Amino Acids

16.02

Weight (kDa)

7.85

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	281
AciI	CCGC	2 cut(s)	279, 281
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	52, 190
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	29, 50
AluI	AGCT	2 cut(s)	29, 50
Alw26I	GTCTC	3 cut(s)	12, 116, 168
AoxI	GGCC	6 cut(s)	43, 93, 181, 246, 259, 267
ApeKI	GCWGC	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	43, 94, 181
AsuHPI	GGTGA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	12, 116, 168
BfaI	CTAG	3 cut(s)	171, 423, 439
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	43, 94, 181
BmiI	GGNNCC	2 cut(s)	277, 311
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	39, 129, 138, 237, 249, 279
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 190
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	6 cut(s)	39, 129, 138, 237, 249, 279
BseLI	CCNNNNNNNGG	2 cut(s)	52, 190
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	6 cut(s)	45, 95, 183, 248, 261, 269
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	52, 190
BsmAI	GTCTC	3 cut(s)	12, 116, 168
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	6 cut(s)	45, 95, 183, 248, 261, 269
BspACI	CCGC	2 cut(s)	279, 281
BspANI	GGCC	6 cut(s)	45, 95, 183, 248, 261, 269
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	277, 311
BspT107I	GGYRCC	1 cut(s)	275
BssECI	CCNNGG	6 cut(s)	39, 129, 138, 237, 249, 279
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	39, 138
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	281
BstMAI	GTCTC	3 cut(s)	12, 116, 168
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 134, 155
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	146
BsuRI	GGCC	6 cut(s)	45, 95, 183, 248, 261, 269
BtgI	CCRYGG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	3 cut(s)	43, 94, 181
Cfr42I	CCGCGG	1 cut(s)	282
CseI	GACGC	1 cut(s)	293
CviAII	CATG	2 cut(s)	343, 385
DdeI	CTNAG	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	39, 138
Eco147I	AGGCCT	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	39, 138
ErhI	CCWWGG	2 cut(s)	39, 138
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	346, 388
FaiI	YATR	2 cut(s)	344, 386
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	2 cut(s)	342, 384
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	3 cut(s)	171, 423, 439
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	6 cut(s)	45, 95, 183, 248, 261, 269
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	346, 388
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	69, 253, 304
Hpy188III	TCNNGA	2 cut(s)	53, 370
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	4 cut(s)	184, 238, 259, 421
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 134, 155
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	346, 388
KspI	CCGCGG	1 cut(s)	282
LpnPI	CCDG	9 cut(s)	15, 38, 74, 116, 143, 273, 275, 329, 337
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	3 cut(s)	171, 423, 439
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	349, 416, 419
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	9 cut(s)	85, 223, 232, 247, 259, 298, 323, 394, 426
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	35, 134, 155
NlaIII	CATG	2 cut(s)	346, 388
NlaIV	GGNNCC	2 cut(s)	277, 311
PceI	AGGCCT	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	277, 311
PspPI	GGNCC	3 cut(s)	43, 94, 181
SacII	CCGCGG	1 cut(s)	282
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	43, 94, 181
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	23, 31, 52, 258, 380
SfaNI	GCATC	1 cut(s)	352
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	81
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	279, 281
SspMI	CTAG	3 cut(s)	171, 423, 439
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	39, 138
TaiI	ACGT	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	81
TseI	GCWGC	1 cut(s)	134
XspI	CTAG	3 cut(s)	171, 423, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.