Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

65182540 .. 65184176

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0474300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAACAGTTCACAGACACATTACAAAACTATATGCAAAAGAACATGGATCTCCAAGAAGGTAACATGTCCAAGGCTTTAGTTGCGTTGAATCCAAAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAACACCAAGTGTATGAACTACCAGATTCACATCCACTTTTGGCAGGGATGGACAGACGGGAACATGATGATCCAAGCCCATACCTTCTTGCAATATGGACGCCAGGACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCCTGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCTAGTGATGCAAATGCCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGCTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

5.81

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	57, 215
AcyI	GRCGYC	1 cut(s)	251
AdeI	CACNNNGTG	2 cut(s)	160, 392
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	91, 312
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	101, 124
AluI	AGCT	2 cut(s)	101, 124
AlwI	GGATC	2 cut(s)	57, 215
ApeKI	GCWGC	3 cut(s)	101, 410, 413
AsuNHI	GCTAGC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	88, 397, 400
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	3 cut(s)	273, 345, 472
BisI	GCNGC	3 cut(s)	102, 411, 414
BlsI	GCNGC	3 cut(s)	103, 412, 415
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	340, 456
BmtI	GCTAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	72, 438
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	72, 438
BseGI	GGATG	3 cut(s)	181, 204, 322
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	88, 397, 400
Bsp143I	GATC	2 cut(s)	49, 220
BspCNI	CTCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	57, 215
BsrDI	GCAATG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	72, 438
BssMI	GATC	2 cut(s)	49, 220
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	2 cut(s)	72, 438
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	9, 392
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	274, 433
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	181, 204, 322
BstKTI	GATC	2 cut(s)	52, 223
BstMBI	GATC	2 cut(s)	49, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	88, 397, 400
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	181, 204, 322
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	274, 433
CseI	GACGC	1 cut(s)	259
CviAII	CATG	3 cut(s)	46, 67, 215
CviJI	RGCY	6 cut(s)	77, 101, 124, 228, 377, 443
CviKI_1	RGCY	6 cut(s)	77, 101, 124, 228, 377, 443
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	51, 222
DpnII	GATC	2 cut(s)	49, 220
DraIII	CACNNNGTG	2 cut(s)	160, 392
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	72, 438
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	72, 438
ErhI	CCWWGG	2 cut(s)	72, 438
FaeI	CATG	3 cut(s)	49, 70, 218
FatI	CATG	3 cut(s)	45, 66, 214
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	102, 411, 414
FokI	GGATG	3 cut(s)	168, 211, 309
Fsp4HI	GCNGC	3 cut(s)	102, 411, 414
FspBI	CTAG	3 cut(s)	273, 345, 472
GluI	GCNGC	3 cut(s)	102, 411, 414
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	49, 70, 218
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	91, 176
Hpy166II	GTNNAC	3 cut(s)	12, 140, 320
Hpy188III	TCNNGA	2 cut(s)	127, 293
Hpy8I	GTNNAC	3 cut(s)	12, 140, 320
HpyAV	CCTTC	2 cut(s)	53, 245
HpyCH4III	ACNGT	2 cut(s)	9, 392
HpyCH4V	TGCA	5 cut(s)	37, 242, 287, 353, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	49, 70, 218
Kzo9I	GATC	2 cut(s)	49, 220
LpnPI	CCDG	5 cut(s)	180, 186, 240, 267, 306
Lsp1109I	GCAGC	3 cut(s)	88, 397, 400
LweI	GCATC	2 cut(s)	340, 456
MaeI	CTAG	3 cut(s)	273, 345, 472
MaeIII	GTNAC	2 cut(s)	62, 380
MalI	GATC	2 cut(s)	51, 222
MboI	GATC	2 cut(s)	49, 220
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	1 cut(s)	301
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	393, 405
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	49, 220
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	49, 70, 218
NspI	RCATGY	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	393
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	91, 176
PkrI	GCNGC	3 cut(s)	103, 412, 415
PscI	ACATGT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	393, 405
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	102, 411, 414
Sau3AI	GATC	2 cut(s)	49, 220
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	4 cut(s)	64, 103, 126, 237
SfaNI	GCATC	2 cut(s)	340, 456
SmiMI	CAYNNNNRTG	2 cut(s)	393, 405
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	273, 345, 472
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	72, 438
TaaI	ACNGT	2 cut(s)	9, 392
TaqI	TCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	91, 176
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	3 cut(s)	101, 410, 413
TspDTI	ATGAA	3 cut(s)	180, 279, 389
TspRI	CASTG	1 cut(s)	395
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	3 cut(s)	273, 345, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.