Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

57318838 .. 57320842

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACCCAAGAGGCAAGGCGGAAGGCGGAGGAGGCGAAGAACAAGACCTACGAGACCGCGCAACAAGCCAAGGAGAAAACACAGTCCACAATGAACCAGGTGAAGGACAAGGCGGCGCAGGAGGCAGAGGAGGCAAGGCGGAAGGCCCAAGAGGCGGCGGAGAAGACTAAAGAGACTTCCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTTCAGCAGACCGGAGAAACAATGAAGAACGTTGCACAAGGTGCGGCTGATGCTGCGAGGAGCACTATTGGGATGGCCAAGAACGATGACCAGGATGATCCTTATTATAGGGAGACTACTACCACTACTAGGACTAATACTGTGACTACAGGGCTCCTGGGACTGGGAATTACCCAAGGAATAGGAACTACTTTTTCAGTAGCACTTACCAGTGCTATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

8.78

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	1 cut(s)	59
AciI	CCGC	9 cut(s)	19, 26, 57, 113, 139, 155, 158, 204, 254
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	5 cut(s)	103, 154, 186, 339, 373
AjnI	CCWGG	4 cut(s)	96, 180, 300, 366
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	47, 167, 317
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	144, 183, 285
ApeKI	GCWGC	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	61, 118
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	2 cut(s)	170, 203
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	4 cut(s)	98, 182, 302, 368
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	47, 167, 317
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	4 cut(s)	114, 156, 255, 264
BlsI	GCNGC	4 cut(s)	115, 157, 256, 265
Bme1390I	CCNGG	5 cut(s)	98, 182, 187, 302, 368
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	5 cut(s)	98, 182, 187, 302, 368
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	170, 203
BpuMI	CCSGG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	69, 180, 367, 385
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 154, 186, 339, 373
Bse1I	ACTGG	2 cut(s)	378, 420
BseBI	CCWGG	4 cut(s)	98, 182, 302, 368
BseDI	CCNNGG	4 cut(s)	69, 180, 367, 385
BseGI	GGATG	2 cut(s)	288, 310
BseLI	CCNNNNNNNGG	5 cut(s)	103, 154, 186, 339, 373
BseNI	ACTGG	2 cut(s)	378, 420
BseRI	GAGGAG	3 cut(s)	44, 143, 283
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	146, 185, 287
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	186, 222
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	5 cut(s)	103, 154, 186, 339, 373
BsmAI	GTCTC	3 cut(s)	47, 167, 317
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	146, 185, 287
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	275, 366
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	9 cut(s)	19, 26, 57, 113, 139, 155, 158, 204, 254
BspANI	GGCC	3 cut(s)	146, 185, 287
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	378, 420
BssECI	CCNNGG	4 cut(s)	69, 180, 367, 385
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	69, 385
Bst2UI	CCWGG	4 cut(s)	98, 182, 302, 368
Bst4CI	ACNGT	2 cut(s)	84, 352
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	288, 310
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	61, 118
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	3 cut(s)	47, 167, 317
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	8 cut(s)	32, 65, 122, 131, 152, 251, 260, 263
BstNI	CCWGG	4 cut(s)	98, 182, 302, 368
BstSCI	CCNGG	5 cut(s)	96, 180, 185, 300, 366
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	2 cut(s)	170, 203
BsuRI	GGCC	3 cut(s)	146, 185, 287
BtsCI	GGATG	2 cut(s)	288, 310
BtsIMutI	CAGTG	1 cut(s)	427
CfoI	GCGC	2 cut(s)	61, 118
Cfr13I	GGNCC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	96
CviJI	RGCY	6 cut(s)	68, 146, 185, 257, 287, 364
CviKI_1	RGCY	6 cut(s)	68, 146, 185, 257, 287, 364
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	4 cut(s)	34, 41, 154, 173
Eco130I	CCWWGG	2 cut(s)	69, 385
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	4 cut(s)	96, 180, 300, 366
EcoT14I	CCWWGG	2 cut(s)	69, 385
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	69, 385
FaiI	YATR	1 cut(s)	318
FaqI	GGGAC	1 cut(s)	384
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	114, 156, 255, 264
FokI	GGATG	2 cut(s)	295, 317
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	114, 156, 255, 264
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	60, 117
GluI	GCNGC	4 cut(s)	114, 156, 255, 264
HaeIII	GGCC	3 cut(s)	146, 185, 287
HapII	CCGG	2 cut(s)	186, 222
HhaI	GCGC	2 cut(s)	61, 118
Hin6I	GCGC	2 cut(s)	59, 116
HinP1I	GCGC	2 cut(s)	59, 116
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	186, 222
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	4 cut(s)	16, 97, 136, 184
HpyCH4III	ACNGT	2 cut(s)	84, 352
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	8 cut(s)	32, 65, 122, 131, 152, 251, 260, 263
HpySE526I	ACGT	1 cut(s)	240
HspAI	GCGC	2 cut(s)	59, 116
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	270, 369
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	250
MabI	ACCWGGT	1 cut(s)	96
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	49, 175, 203, 208, 247
MhlI	GDGCHC	2 cut(s)	275, 366
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	8 cut(s)	4, 22, 25, 115, 121, 124, 145, 261
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	2 cut(s)	186, 222
MspR9I	CCNGG	5 cut(s)	98, 182, 187, 302, 368
MvaI	CCWGG	4 cut(s)	98, 182, 302, 368
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	8 cut(s)	32, 65, 122, 131, 152, 251, 260, 263
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	115, 157, 256, 265
Psp1406I	AACGTT	1 cut(s)	240
Psp6I	CCWGG	4 cut(s)	96, 180, 300, 366
PspGI	CCWGG	4 cut(s)	96, 180, 300, 366
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
SatI	GCNGC	4 cut(s)	114, 156, 255, 264
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	5 cut(s)	98, 182, 187, 302, 368
SduI	GDGCHC	2 cut(s)	275, 366
SetI	ASST	4 cut(s)	50, 102, 243, 253
SexAI	ACCWGGT	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	9 cut(s)	19, 26, 57, 113, 139, 155, 158, 204, 254
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	5 cut(s)	96, 180, 185, 300, 366
StyI	CCWWGG	2 cut(s)	69, 385
TaaI	ACNGT	2 cut(s)	84, 352
TaiI	ACGT	1 cut(s)	243
TasI	AATT	1 cut(s)	378
TauI	GCSGC	3 cut(s)	116, 158, 257
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	107, 248
TspRI	CASTG	1 cut(s)	427
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.