Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

86485297 .. 86485981

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCATCCCACAAACAGAGCTACAGAGCTGGTGAAACCAAGGGCCAGACCGAGGAAAAGGCGAACCAGATGATGGAGTCACTAGGGGAGAAGGCTCACGCAGCAAAGGACAAGACCTACCAGGCAGCTCAAACAGCCAAAGACAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGGAAAGCAAGGAGACAACTAAGGAAAGTGCGTCGGAGGCTGCCCAGAGAGCCGGAGATTCGGCCGAGTCTGGCAAGGAGAGAAGTGAGGGGTTCCTCCAACAGACTGGAGAACAGATGAAGAACATGGCCCAAGGTGCTGTTGATACTGTGAAAGGCACCCTCGGCCTGGCCAAGGATGATGAGGAAGATGAACCTGTTTATTATAAGAGGGACAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

147

Amino Acids

15.89

Weight (kDa)

6.34

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	279, 387
AfiI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 385, 391
AjnI	CCWGG	2 cut(s)	120, 384
AluBI	AGCT	3 cut(s)	21, 29, 128
AluI	AGCT	3 cut(s)	21, 29, 128
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	6 cut(s)	43, 180, 279, 345, 382, 387
ApeKI	GCWGC	3 cut(s)	101, 125, 257
AspS9I	GGNCC	3 cut(s)	43, 181, 346
AsuHPI	GGTGA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	113, 137, 244
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	122, 386
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	83, 439
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	102, 126, 258
BlsI	GCNGC	3 cut(s)	103, 127, 259
Bme1390I	CCNGG	2 cut(s)	122, 386
BmgT120I	GGNCC	3 cut(s)	43, 181, 346
BmiI	GGNNCC	2 cut(s)	311, 376
BmrFI	CCNGG	2 cut(s)	122, 386
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	345
BsaJI	CCNNGG	5 cut(s)	39, 51, 349, 379, 390
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 385, 391
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	122, 386
BseDI	CCNNGG	5 cut(s)	39, 51, 349, 379, 390
BseGI	GGATG	2 cut(s)	5, 400
BseLI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 385, 391
BseNI	ACTGG	1 cut(s)	328
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	113, 137, 244
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	6 cut(s)	45, 182, 281, 347, 384, 389
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 385, 391
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	6 cut(s)	45, 182, 281, 347, 384, 389
BspANI	GGCC	6 cut(s)	45, 182, 281, 347, 384, 389
BspLI	GGNNCC	2 cut(s)	311, 376
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	5 cut(s)	39, 51, 349, 379, 390
BssT1I	CCWWGG	3 cut(s)	39, 349, 390
Bst2UI	CCWGG	2 cut(s)	122, 386
Bst4CI	ACNGT	1 cut(s)	367
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	5, 400
BstMAI	GTCTC	1 cut(s)	224
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 200, 254, 266, 353, 381
BstNI	CCWGG	2 cut(s)	122, 386
BstSCI	CCNGG	2 cut(s)	120, 384
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	113, 137, 244
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	6 cut(s)	45, 182, 281, 347, 384, 389
BtsCI	GGATG	2 cut(s)	5, 400
Cfr13I	GGNCC	3 cut(s)	43, 181, 346
CseI	GACGC	1 cut(s)	237
CviAII	CATG	2 cut(s)	216, 343
DdeI	CTNAG	1 cut(s)	237
EaeI	YGGCCR	2 cut(s)	279, 387
EagI	CGGCCG	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	3 cut(s)	39, 349, 390
Eco52I	CGGCCG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	120, 384
EcoT14I	CCWWGG	3 cut(s)	39, 349, 390
ErhI	CCWWGG	3 cut(s)	39, 349, 390
FaeI	CATG	2 cut(s)	219, 346
FaiI	YATR	3 cut(s)	217, 344, 423
FatI	CATG	2 cut(s)	215, 342
Fnu4HI	GCNGC	3 cut(s)	102, 126, 258
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	3 cut(s)	102, 126, 258
FspBI	CTAG	2 cut(s)	83, 439
GluI	GCNGC	3 cut(s)	102, 126, 258
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	6 cut(s)	45, 182, 281, 347, 384, 389
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	219, 346
HinfI	GANTC	3 cut(s)	77, 275, 284
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	85, 184
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	158, 203
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 200, 254, 266, 353, 381
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	219, 346
Lsp1109I	GCAGC	3 cut(s)	113, 137, 244
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	83, 439
MaeIII	GTNAC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	349, 416
MlsI	TGGCCA	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	86, 293
MmeI	TCCRAC	2 cut(s)	231, 340
MnlI	CCTC	8 cut(s)	46, 146, 247, 298, 323, 389, 394, 420
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	122, 386
MvaI	CCWGG	2 cut(s)	122, 386
MwoI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 200, 254, 266, 353, 381
NlaIII	CATG	2 cut(s)	219, 346
NlaIV	GGNNCC	2 cut(s)	311, 376
NmeAIII	GCCGAG	2 cut(s)	307, 360
NmuCI	GTSAC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	103, 127, 259
PleI	GAGTC	2 cut(s)	85, 292
PpsI	GAGTC	2 cut(s)	85, 292
PsiI	TTATAA	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	120, 384
PspGI	CCWGG	2 cut(s)	120, 384
PspN4I	GGNNCC	2 cut(s)	311, 376
PspPI	GGNCC	3 cut(s)	43, 181, 346
SatI	GCNGC	3 cut(s)	102, 126, 258
Sau96I	GGNCC	3 cut(s)	43, 181, 346
SchI	GAGTC	2 cut(s)	86, 293
ScrFI	CCNGG	2 cut(s)	122, 386
SetI	ASST	7 cut(s)	23, 31, 119, 130, 157, 355, 415
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	22
SspMI	CTAG	2 cut(s)	83, 439
StyD4I	CCNGG	2 cut(s)	120, 384
StyI	CCWWGG	3 cut(s)	39, 349, 390
TaaI	ACNGT	1 cut(s)	367
TaqII	GACCGA	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	3 cut(s)	101, 125, 257
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	350, 423
Van91I	CCANNNNNTGG	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	83, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.